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15-2234-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 5064031 [Map]; Strand: c
      • AT2G12470.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 15-2234-1 - 3-prime edge 
    CTCTCAATGG AACCATCTGC ATTATGTTTA ATTTTGAAAA CATATTTACA 
    ACCAATAGCC TTCTTACCAG ATGGTAGAGG ACAAACCAAC CAAGTACCAG 
    CCTGTTCCAT AGCTTTCAAC TCTTCACCAA TAGCATCACA CCACTCTTTC 
    AGTTTTATAG CCTCAGAATA TTTACNGGAG TTCAAGAGTA AGTGAAATAT 
    TATTAATAAA AAAGCTGAAA GAAAAGCTAA GTTTAATATA AGAGATATAG 
    TTAGAGATAG GATAAGGAGT AGAAAATGAA GTATTATATA TGTAGTAATC 
    CTGCAAATGA GCTGGGAGTT TGGTAGGTCG TCGAGAATCT AATGCCAAAG 
    GCAAAGAATT

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 5063915 [Map]; Strand: c
      • AT2G12470.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 15-2234-1 - 5-prime edge 
    ATTGAGAGAT ATAAGGCTAG GTTGGTAGCA AAAGGTTACA CACAAGAAGA 
    AGGCATCAAT TTTGTTGATA CTTTTTCTCC AGTAGCTAAG ATGGCCATTG 
    TGAAGATTCT TTTGGCTTTT GCAGCTAAGT TGAATTGGCA TCTTAATCAA 
    CTGGATGTGT CAAATGCTTT CTTGAATGGG GAATTGGATG AAGAAATCTA 
    CATGGAATTA CCCCCTGGTT ATGAAGTTCC TGATATTGAT GCGTCTCAGG 
    GCAGATTTGT GTGTAAACTG CAGAAATCGA TTTATGGTTT AAAGCAGGCT 
    TCGCGACAGT GGTTTCTCAA GTTAAAAGGT ACTCTTCGTG CACTGAGGTT 
    TAGACAACTC ATAGTGATCA CACTCTTTTT ACACGGCTAG TAGATGGAAT 
    TTTTGTTGTC ATTGTGGTGT ATGTTGATGA CATCATAATA GCAAGCAGTT 
    GTGAAAGTGT GGTTCCTATT CTGATTACTC AACTTGAGAA AGCT

AT2G12470.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 5.1e-277 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)
Link
InterPro Scan - TAIR