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15-2305-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 241072 [Map]; Strand: w
      • AT5G01630.1 - [+] show detail - BRCA2-like B
        Distance: -161; Region: promoter
    Flanking Genome Sequence: 15-2305-1 - 5-prime edge 
    GCCAANAGGG ANGAATCTGG GAGNGCANGA ATNCTTATTA NNATNGNNTN 
    ATTTNCTTTC CCCAAACCAA ANTCATCACC NAAAATCCAA AAAGTAAAAA 
    GNTCTGACAA ANGCGGNAAA GTTGAAAAAG ATNCGGGCCG AAAAGNNTNA 
    GACGCATGGC CATAANNNTT AACTTCGGGC CNTGNGNTCN GGNGGNCATA 
    GNNGNTCTNN NACAAGNNNN ANNNTNNNTC ATNANNTNTN TATNGNNTNN 
    NTCNTNNCNT GNNNACAATG CNAACACCGA TAGNCNAGTA CAAANNCGTG 
    GTNNCNNGAN CNCCNNNCAN TTNTTAANAN ATAGNNNNAN GANNGGNGAN 
    NTGGAAGANN NNANCNCNCG ANGNAGCNNN ANNNTNGNTN CNNATNGTNN 
    CNANGNGNNN ANNCANNCCG ANNNANAANA NGGATANTAC ACNCCGNNAT 
    CTTNTNGNTN NTGNTATNGC TCCGANTTNT TTCACANAAN AAANACNGAN 
    CNNNNTNGAC NGNTGGGAAG NNNNNNANGG AGNNANCNNC GANAANNNNA 
    GCNTNNTGNT TGTNNCNGNN TANNNCGNNN NNGGNCTTCG NNTNGAANCG 
    ANANCGNNNN NCNCANNNAT ANTNAANTAA GNACATNGAN CNANAANAGA 
    ANNNANCNAN ACGCGNTAAN CANNGCNGNA NTANNAGAAG AGNNTANGNG 
    CNAATGNNAN ANNGCGAANC NCNCCCAATA CTGNTNGANN NNNGCNAAAN 
    GAGTNNGNNN GNTGAANGTA TNNNACGANA TTACCGNGAC AGAGCANTNN 
    NGNGGNNCNN NAAAGCGANN NTCGNNAGAN TATGGAANCA CN

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 240992 [Map]; Strand: w
      • AT5G01630.1 - [+] show detail - BRCA2-like B
        Distance: -81; Region: promoter
    Flanking Genome Sequence: 15-2305-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATAGG 
    CAATTCTGAA TCGCGAGGTT TAGTTCTCCG GCTGAATCAT ATAACGACGA 
    ATCGGAAAAC TTGGAAACCC TAGAACTGAA TAAATGTCGA CGTGGCATTT 
    ATTTTCCGAT TCCAGCGGCG ATGGTTTCCG GTGGGAAGTC GCTGGCCGGA 
    TTCTTCAGTC CGTCTCGGAT TCTACGCCAA CCAAGGCGCT CGAATCGACA 
    GCTCCTCTAC CTTCCATGGC CGATCTCTTG CTCCAAGGTG ATTCTTCGTA 
    TCTTCCTTTT CTTTGTCGAA TCGTGTTTGT CATGTGACTC AAAGGAGATT 
    GAATTATTAT TTGATGCTTC AAGGATGCTC GAAGCT

AT5G01630.1

Model type
Protein coding
Short Description
BRCA2-like B
Curator Summary
Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with with both Rad51 and Dss1(I) or both Dmc1 and Dss1(I) in a tripartite complex.
Computational Description
BRCA2-like B (BRCA2B); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BREAST CANCER 2 like 2A (TAIR:AT4G00020.1); Has 281 Blast hits to 210 proteins in 91 species: Archae - 0; Bacteria - 4; Metazoa - 134; Fungi - 18; Plants - 61; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).
Link
InterPro Scan - TAIR