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15-2306-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 5871085 [Map]; Strand: w
      • AT3G17203.1 - [+] show detail - pseudogene, gibberellin 2 beta-hydroxylase, blastp match of 50% identity and...
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 15-2306-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTATTTGCTC CTTCACACTA ATCCTCTCTT CCTTTCTCAG 
    TTATCATTTG GTAACGATTC TACCAAGTTC GGGTACGTTA CATAATTACT 
    TGGCTACTGT GGAGACCTGG TTAGTATGTA GAACATTAAG ATTAGGGATA 
    TCTCGCAATA AAAACGAGTT CTGTCTATAT ATCAACGTAT CTTACAGTCT 
    AATACGTACA GAAATGTAAA TGCAGTTTTT TCCTTTGTGT ATAAATGCGA 
    GAACCTATCC GTATATACGA AATTTGCATG CATGCATGTG TATAGTTATA 
    TCTGCTAGAT AGATTTTTCT TTTCTACTAG AGATAGATTA CTAGTATATG 
    AGTTTGATTT TGTTTTTCGC GTTTGAATGT ACATGTTAAA AGTGTGTCTA 
    GAACATAAAA ACCCACAAGA TGATTTCAGA GTGTTCTATT GACTATAGTG 
    GAAAAGAAAA GCTAATAATT AACCCATAAT AAAAAATNTA TAGTTGACTA 
    ATTACAAGTG AATTGGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 5841257 [Map]; Strand: c
      • AT3G17120.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: exon1 (5UTR)
      • AT3G17120.2 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -60; Region: promoter
    Flanking Genome Sequence: 15-2306-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCAA 
    GAGTCTCAGC TATATTTAGA ACAACAACAC ATGTCTGAAC ACATTACAGT 
    TCCTATATCT GTTTCGAATT

AT3G17120.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02380.1); Has 67 Blast hits to 67 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G17120.2

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02380.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G17203.1

Model type
Pseudogene
Curator Summary
a pseudogene initially named GA2ox5 and thought to be a member of the gibberellin 2-oxidase enzyme family. It was later shown to have a large DNA insert in the putative gene model.
Computational Description
pseudogene, gibberellin 2 beta-hydroxylase, blastp match of 50% identity and 1.1e-66 P-value to GP|5579092|gb|AAD45424.1||AF100954 gibberellin 2-oxidase-like protein {Pisum sativum}
Link
InterPro Scan - TAIR