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15-2326-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 20220126 [Map]; Strand: c
      • AT3G54620.3 - [+] show detail - basic leucine zipper 25
        Distance: 0; Region: exon1 (CDS)
      • AT3G54620.1 - [+] show detail - basic leucine zipper 25
        Distance: 0; Region: exon1 (CDS)
      • AT3G54620.2 - [+] show detail - basic leucine zipper 25
        Distance: 0; Region: exon1 (CDS)
      • AT3G54625.1 - [+] show detail - other RNA
        Distance: -684; Region: promoter
    Flanking Genome Sequence: 15-2326-1 - 5-prime edge 
    TTCCACAGGC TTATCAATGA GTTGTCTGGT TCCGATTCGA GCCCTACGAC 
    TAACACAATC GAGAGATCAC CTCCACCGGT TCAGTCTCTT TCGAGATTAG 
    AAGAAACCGT TGACGAAACC GAAGATGTTG TTGAGATTCA GAAACCGCAG 
    AATCATCGAC GGCTCCCTGT TGATGATCAA GGGAAGAATC GGAATCGTGC 
    TCCGTCGTCT GATCCGGTTG ATTCTTCAGC TCCTGTTGTT GTTGATCCTA 
    ATCAGTATCA TGCGATTCTT AAGAGCAAGC TCGAGCTTGC TTGCGCTGCT 
    GTTGCTCGTC GTGTACGTCT CTTAGATCCA TTTCTTATGT GTATTCAGAT 
    GAAAGGAATT GATGATTTCA ACAATAAGGA ATGTTTGGTT GTGTGTTGAT 
    TTGATATGAT TTTCTTCAGG GTGGGAACTG TGAAACCGGA AGATTCGAGT 
    GCTTCAGCTA GCAATCAAAA ACAAGCTCAG GGTCACGTAT CCGNTGCTTT 
    GTTTTGGTTT NGGGTTTTTG GACTCTGTGT AACTTNGTCN GTNGGCNAAT 
    GTGAANGGTT GGGATTACNT NGGAGAGCAA GCGNTTTGCT CNGANATTTG 
    TTTGGCATTN GGATTANANA NTNAAATGAN NGNNNANTTC NGTCTNANNN 
    GAANTNCAGA ATNTNANGGA ANCTNANAGA AAAAAAGNCT TTGGTTTGGN 
    AATNANCAGG CTTCN

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 20220188 [Map]; Strand: c
      • AT3G54620.3 - [+] show detail - basic leucine zipper 25
        Distance: 0; Region: exon1 (CDS)
      • AT3G54620.1 - [+] show detail - basic leucine zipper 25
        Distance: 0; Region: exon1 (CDS)
      • AT3G54620.2 - [+] show detail - basic leucine zipper 25
        Distance: 0; Region: exon1 (CDS)
      • AT3G54625.1 - [+] show detail - other RNA
        Distance: -622; Region: promoter
    Flanking Genome Sequence: 15-2326-1 - 3-prime edge 
    ATTTGAAAAC GGTAGAGGTA TTTTACCGAC CGTTACCGAC CGTTTTCATC 
    TATACTGTGG AACGCCCACT CCGATTGACT TCGAGTCATC CCATCCGCCA 
    CGTTCTGCGT CGGTGACGGA GTCGATGACG ATCCCGGCGA CGGCGCCGGA 
    GCGGGAACAG GCCAGAAGGA TTCGGTCAAA TCATCGACAG AGAAGACGAT 
    GTGCATCGCT TACCCAATCG CCTCAAATTC TTCTTCTTCT TTTTTCTCTC 
    TCTCTCTCTC TCTCTCTCNC TCTTTCCTTA ATNTGTTTTT GTCTNACGGG 
    GANCCGCCAT TATTGATTAA GATACTNGAC ACAGTTTCTG TATTGTATTG 
    GATTAGTACT AACCAACATA TCTTTTNTGT GTNAATAATT NAATAAAAAT 
    GCAAATNNGG CGCATNNAAA TNTNTACTTT AGNNGATGTG TGTNATNNAC 
    TNNGTGNGCA AANGGGTNNN AATNNNGNGN NGGNTATATA GNAAAAACAA 
    NGGAGGNNNT NCTNNNAANN TNTAGANANT ATTNCCNNNT NNTNTTNAGN 
    CANANNGANA GNGGGNCCCN TNTGTTGTNC NTGNTTNNNA CAGNAGGNCN 
    NNNTTNNAAC NCNNNAGNNG NAGNGNTNNC ANNTGGGANN GNGANNGAGG 
    GNATANNTAC TCNNNNCAGN NTGNNNCNAN NAGTCATNGG NNGNNTANNA 
    NTANTNGNNA NACNNNATNG NACNTAAAAA AAGCCCCCGN NNNGNTAGNG 
    ANAATANNGN GNNGCGCNNA TNNGNTNCNC NAAANANAAG AAGGGAG

AT3G54620.1

Model type
Protein coding
Short Description
basic leucine zipper 25
Curator Summary
bZIP transcription factor-like protein mRNA
Computational Description
basic leucine zipper 25 (BZIP25); FUNCTIONS IN: protein heterodimerization activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616), Basic leucine-zipper, C-terminal (InterPro:IPR020983); BEST Arabidopsis thaliana protein match is: bZIP transcription factor family protein (TAIR:AT4G02640.2); Has 2261 Blast hits to 2259 proteins in 207 species: Archae - 2; Bacteria - 16; Metazoa - 141; Fungi - 138; Plants - 1903; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G54620.2

Model type
Protein coding
Short Description
basic leucine zipper 25
Curator Summary
bZIP transcription factor-like protein mRNA
Computational Description
basic leucine zipper 25 (BZIP25); FUNCTIONS IN: protein heterodimerization activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: bZIP transcription factor family protein (TAIR:AT4G02640.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G54620.3

Model type
Protein coding
Short Description
basic leucine zipper 25
Curator Summary
bZIP transcription factor-like protein mRNA
Computational Description
basic leucine zipper 25 (BZIP25); FUNCTIONS IN: protein heterodimerization activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616), Basic leucine-zipper, C-terminal (InterPro:IPR020983); BEST Arabidopsis thaliana protein match is: bZIP transcription factor family protein (TAIR:AT4G02640.2).
Link
InterPro Scan - TAIR

AT3G54625.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT3G54630
Link
InterPro Scan - TAIR