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15-2572-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 2791090 [Map]; Strand: w
      • AT5G08610.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 15-2572-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCTT CAGGGTCGTC TTTTCGTGGA AGGAGTGATA 
    GAAATGTAGA CTCAGGGTCG TCTTTTCGTG GTAGGAATGA TAGAAATGTA 
    GACTCAGGGT CGTCTTTTCG TGGTAGGAAT GATAGAAATG TAGAATCAGG 
    GTTTAGGAGA GAGCCAGGTT CCGAAAACAA CAGGGGCTTG GGGAAACAGA 
    CAAGAGGCTT AAGCCTGGAA GAGGAAGATA GTAGTGACGA TGACGAGAAC 
    AGGGTTGGAT TGGGAAACAT CGATGATTTG CCTAGTGAAG ATAGTAGTGA 
    TGAGGATGAT GAAAATGATG AGCCTCTTAT TAAGAAAGCG GCTTCTGCTA 
    AGGCTGTTCA GACTGATAAG CCAACTGGTG AACATGTCAA AACTTCAGAT 
    TCTTACTTGT CTAAGACAAG GTACATTATT TTTCACTATG TGACTTACTT 
    TGACCATTTA GTTCTGTTTG ATTGATAATA TTCTTTATGG TACATGGTTT 
    ACAGATTTGA TCAATTCCCA CTCTCTCCCT TATCGCTAAA AGCCATCAAG 
    GATGCGGGAT TTGAGACAAT GACTGTTGTG CAGGAGGCTA CTCTTCCTAT 
    CATTCTCCAA GGTGAACTTT TCTTCATGAG CCTTGTTTAC GATGCAAAAA 
    GAAAAAATGC CATGATTTAN AAATGTAGTG ACAATTTNCT AATTGACGAC 
    ATCTCACAAG CTNCCAC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 2791092 [Map]; Strand: w
      • AT5G08610.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 15-2572-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCA 
    TGCCTGAGTC TACATTTCTA TCACTCCTTC CACGAAAAGA CGACCCTGAA 
    TCTACATTTC TATCATTCCT ACCACGAAAA GACGACCCTG AGTCAACATT 
    TTTGTCACTC CTTCCACGAA AAGACGACCC TGAATCTACA TTTCTATCAC 
    TCCTTCCACG AAAAGACGAC TCACTACTCT TTCCTTGAAC ACGACCGTTC 
    CTTGAACCTT CTCGATCACC TAACCGCTTG TTCCCGAACG AATCAGCAGG 
    CTCGCCGCTG GTTCTCCTCC TGTTCGGACT CCCAAACCTA TCCATTTCAC 
    CTTCCTTTCC CCTTTTCGCA CCACCGAACC TATCAGATTG GCCTTCCCTT 
    CCTCTCCTTG GACCCCTACG GCCCTACTGG TGTCCCTGTC TACGTTTCTA 
    CGAACCACCT CTGGATC

AT5G08610.1

Model type
Protein coding
Short Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Computational Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT5G08620.1); Has 49840 Blast hits to 44437 proteins in 3094 species: Archae - 842; Bacteria - 25196; Metazoa - 7587; Fungi - 5309; Plants - 2787; Viruses - 50; Other Eukaryotes - 8069 (source: NCBI BLink).
Link
InterPro Scan - TAIR