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Mutant Lines
15-2594-1

15-2594-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

3 prime edge [+] show sequence
1. Chromosome: 1; Position: 6154662 [Map]; Strand: w
  - AT1G17880.1 - [+] show detail - basic transcription factor 3
    Distance: -680; Region: promoter
  - AT1G17890.1 - [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
    Distance: 0; Region: exon2 (CDS)
  - AT1G17890.2 - [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
    Distance: 0; Region: exon1 (CDS)
  - AT1G17890.3 - [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
    Distance: 0; Region: exon2 (CDS)
Flanking Genome Sequence: 15-2594-1 - 3-prime edge
```
AATGTAGGAA GTGGTGTTGA AGTGACGATC AAAGAATTGG CTGAGTTGGT 
GAAAGAAGTT GTTGGGTTTA AAGGAAAGCT
```
5 prime edge [+] show sequence
1. Chromosome: 1; Position: 6154778 [Map]; Strand: w
  - AT1G17880.1 - [+] show detail - basic transcription factor 3
    Distance: -796; Region: promoter
  - AT1G17890.1 - [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
    Distance: 0; Region: exon2 (CDS)
  - AT1G17890.2 - [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
    Distance: 0; Region: exon1 (CDS)
  - AT1G17890.3 - [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
    Distance: 0; Region: exon2 (CDS)
Flanking Genome Sequence: 15-2594-1 - 5-prime edge
```
CCTACATTCA CATGCTCAAA TCCGCTGTAC TGATCCATCA AGAAAACACA 
AGCATCAGCC AAATCATCCA CATGTAAAAA CTCCCTCAAC GGGCTTCCAC 
TTCCCCAAAC CACAACTTCG TCAGCATTAT TGGCTTTAGC TTCATGAAAC 
CTCCTCATGA GAGCAGGCAG CACATGGGAA TT
```

AT1G17880.1

Model type: Protein coding
Short Description: basic transcription factor 3
Computational Description: basic transcription factor 3 (BTF3); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to salt stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nascent polypeptide-associated complex NAC (InterPro:IPR002715); BEST Arabidopsis thaliana protein match is: Nascent polypeptide-associated complex NAC (TAIR:AT1G73230.1); Has 841 Blast hits to 841 proteins in 250 species: Archae - 0; Bacteria - 0; Metazoa - 427; Fungi - 178; Plants - 145; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G17890.1

Model type: Protein coding
Short Description: NAD(P)-binding Rossmann-fold superfamily protein
Computational Description: GER2; FUNCTIONS IN: coenzyme binding, binding, catalytic activity; INVOLVED IN: GDP-L-fucose biosynthetic process, cellular metabolic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase 1 (TAIR:AT1G73250.1); Has 26865 Blast hits to 26861 proteins in 2796 species: Archae - 647; Bacteria - 15991; Metazoa - 493; Fungi - 205; Plants - 723; Viruses - 26; Other Eukaryotes - 8780 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G17890.2

Model type: Protein coding
Short Description: NAD(P)-binding Rossmann-fold superfamily protein
Computational Description: GER2; FUNCTIONS IN: coenzyme binding, binding, catalytic activity; INVOLVED IN: GDP-L-fucose biosynthetic process, cellular metabolic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase 1 (TAIR:AT1G73250.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G17890.3

Model type: Protein coding
Short Description: NAD(P)-binding Rossmann-fold superfamily protein
Computational Description: GER2; FUNCTIONS IN: coenzyme binding, binding, catalytic activity; INVOLVED IN: GDP-L-fucose biosynthetic process, cellular metabolic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase 1 (TAIR:AT1G73250.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR