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15-2645-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 74329 [Map]; Strand: c
      • AT4G00180.1 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: 0; Region: exon3 (CDS)
      • AT4G00180.2 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 15-2645-1 - 5-prime edge 
    ATAAACATGA ACATGATGAT GAGCCATCAC GCTTCAGCTC ACCACCCGAA 
    CGAGCATTTG GTTATGGCGA CTCGCAACGG AAGATCAGTG GATCATCTAC 
    AAGAGATGCC TCGGCCACCA CCAGCCAATA GACGTAACCT TCCATCTTCT 
    ACTCTTTATT TCAACATCTT CATATATATA TATAAGAAAA CAAAAACCCT 
    AATTCACAAA ACCTTATCCA TTCATTTCTT CAACCTTTTA TATATACACT 
    CCAAAGAATC TCGTTTGTTT ATAATGAATT TATAAGTTTT GATTTCATTT 
    TTGTTCCCTC GGTATGTGAC TTCTCGCATG CACTTTTTTT TNGGTCANAA 
    AACANTTTCG ACAACAAAGG GAAAATTAAT AAGNGNTGTG TTTATCCCCC 
    GGAAATCTAG CTAANCCTAT AGATGCCANC TGATATAGTT TGGGGGGTAG 
    ATCGTAANAA AGATAATGAT GAAGTGATGA TGATANCNAC CAAAGTGAGA 
    GGGAGAGGGA GAGAGAAAAG GGNGGAAGAG TCAAAAAGNG AGGGNTTTTT 
    TTTTNAAAAN GGGNTTTTTN GGGNAATTTA NAAAANTTGG GGGGGGGGNA 
    AAAAAAANAA AANNNNTTTT TTTAAAAAAG GGGNGNGNNN GGAAAAAAAA 
    AAAANNTTNT TTNNTTGTTT NNTTGGGGAA AAANCCCCCC CNAAAGGNNN 
    AAAAAAGNCC CCCCCCCACC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 74436 [Map]; Strand: c
      • AT4G00180.1 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: 0; Region: intron2 (CDS)
      • AT4G00180.2 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 15-2645-1 - 3-prime edge 
    ATTAAAACGG TAGAGGTATT CTGCCNTCCG CTNCCNATCG NCTNCTTNCC 
    TATGAAATCA GCAAACTAAT TGGCAAAAAA AACTTAAAAC ACTANTCAAA 
    CCAAACTACT TTGATATGAT GTTTTCGAAA GAAACCCTAG TTAACTAGCC 
    ATTGCCAAAC TACTTANATC TATCCCGGGA TGCTAACAAA ATTAAACATT 
    TTTGGATTGA GTTTCACAAT TTTGCGTTTC TCGAGAAGAA AAGCCCTAAT 
    TATTACTCTC TGTTTTTTTT ATGAAAGAAC CCTAATTTGT TTCGATGAAT 
    GAAACCGATG TACCAAAAGA TTTGGAGGAG GAGGAGGAGG AGGGGGAGGT 
    AAAAAGGAAT GGCCAAGGTT GGAAACGGAT GGAAGAAGAA GAGCTCTCAT 
    GCTCACGGTC ACCGACAAAA GGTTCGAACA GTGGCCGCAT CTGACCGTCA 
    CCGTCTTGAA CAAACTACTC GGAGGAACAC TCACCTACCA ATTAATATCA 
    CACATTAATT AACTAGTAAT TCATGTGAAA CCCTAGCTAG AGTTATAAAT 
    TGGAAATNTT GAGATGAGAT ATAAGAATAN TCCNANTATA CAGCNAGGAC 
    AGNGCCCGCA GAAGCTGCAN TGGACGTAAC NNAGCTGGNC CGTANATGAA 
    AAGTGGNCCN GNGGAANAGC TGNNNATGAG GANGACNACT TGGACCTGCT 
    CGACNTGGAG TNTTTTTNTN GANTNNAAAA AAAANGGNGT NGAGAAAGNG 
    GNGGGCNTTT GTTTGNTGAA AGNNNATAAT GGTTNGGNTN ANAATNNGGG 
    NATTCNNCTC CCCC

AT4G00180.1

Model type
Protein coding
Short Description
Plant-specific transcription factor YABBY family protein
Curator Summary
YABBY gene family member, likely has transcription factor activity, involved in specifying abaxial cell fate. Along with FIL, involved in patterning of the fruit. GUS reporter gene expression in seedlings is observed in the young leaves and as the leaf matures, expression is restricted to the abaxial tissues of leaves, expression is also observed on either side of the leaf margin in the younger tissues of leaf blades.
Computational Description
YABBY3 (YAB3); CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: Plant-specific transcription factor YABBY family protein (TAIR:AT2G45190.1); Has 469 Blast hits to 469 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 6; Plants - 442; Viruses - 2; Other Eukaryotes - 15 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00180.2

Model type
Protein coding
Short Description
Plant-specific transcription factor YABBY family protein
Curator Summary
YABBY gene family member, likely has transcription factor activity, involved in specifying abaxial cell fate. Along with FIL, involved in patterning of the fruit. GUS reporter gene expression in seedlings is observed in the young leaves and as the leaf matures, expression is restricted to the abaxial tissues of leaves, expression is also observed on either side of the leaf margin in the younger tissues of leaf blades.
Computational Description
YABBY3 (YAB3); FUNCTIONS IN: protein binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: fruit development, abaxial cell fate specification, regulation of transcription; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: Plant-specific transcription factor YABBY family protein (TAIR:AT2G45190.1); Has 465 Blast hits to 465 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 6; Plants - 438; Viruses - 2; Other Eukaryotes - 15 (source: NCBI BLink).
Link
InterPro Scan - TAIR