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15-2674-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7645645 [Map]; Strand: c
      • AT1G21750.1 - [+] show detail - PDI-like 1-1
        Distance: -55; Region: promoter
      • AT1G21750.2 - [+] show detail - PDI-like 1-1
        Distance: -56; Region: promoter
    Flanking Genome Sequence: 15-2674-1 - 5-prime edge 
    CTCCGGGGTT AGCTCTCAGA GATATTTATC ACTGCAAAAC ACGAAAACTG 
    AATGCTCCTA AATTGGTCAT ACATCCACGT GGCTATCTCT AATTGGGTAT 
    TACGTCGTCA TAGTTTATAG GGATTTGGCA AGAATTTTAA TGTTTATACA 
    GTGTCTTGAT AATTTTGACC TAGGCCGTTA TAAAATTTAT TTAGTTATTT 
    ACTCCATTTT ACCAGCAGTA AAAAGTAATT TTAAGAAGAG AAAAATTGTC 
    TAAACCGAAG ACACACTATT CCGCACCAAT GTACAAGCGT CACGATATCG 
    ACAATGACGT GGCTTCTTCT CTTTCGTTGA TCTTGTTGTG AGATCTCAGG 
    TCCGTGACTT CGTGCAAGTA AATGGTCATA GATCTTAAAT CTGACCAATT 
    ATGTTTGGTT TCTTGCGATT ATTATCAATT TTCTCATAGA TTAATGATTA 
    TTATAAGGTT CANATTTCAG AAGTAATTTA ATTTAAAGAT CTGAGAACCT 
    TAAAATAGAA AAAGATTAAG AATCTACAAG CAAGTAGCCA ACCAATCAAT 
    GAATATATAA ATGCTAAAAT ATGTACAACA ATTTGTTTCC TAAATCCGAA 
    TCTAATTTCA TTACCAAAAC TTTTTAATTC GNGCAAAATC AATCTTCAAA 
    CTCAGGCTGT TGGTGGTGGT TGAAACCTAA CATNTTCATG AGCCTTCACA 
    ACTTGNGAAG GGAAATCCCC AAGCCTCAAA NATNGGTACT AACCG

AT1G21750.1

Model type
Protein coding
Short Description
PDI-like 1-1
Curator Summary
Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily; isoform contains non-consensus GA donor splice site at intron 9. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). Neither AtIRE1-2 nor AtbZIP60 appear to be required for this response.
Computational Description
PDI-like 1-1 (PDIL1-1); FUNCTIONS IN: protein disulfide isomerase activity; INVOLVED IN: in 6 processes; LOCATED IN: in 8 components; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Disulphide isomerase (InterPro:IPR005788), Thioredoxin fold (InterPro:IPR012335), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin-like subdomain (InterPro:IPR006662), Protein disulphide isomerase (InterPro:IPR005792), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: PDI-like 1-2 (TAIR:AT1G77510.1); Has 31573 Blast hits to 17834 proteins in 2924 species: Archae - 337; Bacteria - 15428; Metazoa - 5451; Fungi - 1644; Plants - 2422; Viruses - 29; Other Eukaryotes - 6262 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G21750.2

Model type
Protein coding
Short Description
PDI-like 1-1
Curator Summary
Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily; isoform contains non-consensus GA donor splice site at intron 9. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). Neither AtIRE1-2 nor AtbZIP60 appear to be required for this response.
Computational Description
PDI-like 1-1 (PDIL1-1); FUNCTIONS IN: protein disulfide isomerase activity; INVOLVED IN: in 6 processes; LOCATED IN: in 8 components; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Disulphide isomerase (InterPro:IPR005788), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin-like subdomain (InterPro:IPR006662), Protein disulphide isomerase (InterPro:IPR005792), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: PDI-like 1-2 (TAIR:AT1G77510.1); Has 30765 Blast hits to 17459 proteins in 2902 species: Archae - 337; Bacteria - 14753; Metazoa - 5498; Fungi - 1629; Plants - 2433; Viruses - 29; Other Eukaryotes - 6086 (source: NCBI BLink).
Link
InterPro Scan - TAIR