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Mutant Lines
15-2729-1

15-2729-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 4; Position: 221089 [Map]; Strand: c
- AT4G00480.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
  Distance: -1346; Region: intergenic
- AT4G00490.1 - [+] show detail - beta-amylase 2
  Distance: -1231; Region: intergenic

GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
CCCATCCTAC TTTCATCCCC ACAAGTGGTG CGTTACTAAA TTATGTAGGG 
CTTCGTGGAT AGAGATGGAT CAATTATTAT TTTCACGAGT TTCTTGCCTT 
CATTTCAGCC AGCTCTCTCC TGATCTTGCC TTCAATTTTA TTACTATTTT 
TTTACTGCCA CTTGCTATAT TTACTTACTT CGGACAAAAT AGTGCTTTGA 
TGGTAAACAA ATAACGATCG GTATATGCGA TGTCTCGCGA TTGATTATCA 
AACTTGAACA GTAGTGTGTA TTTGTTTAAT ATATAATCTA TTAGAGTATC 
ATGGAATTAT TCGGGTGAAA TGCGCATTTA TATCTATCAT AGAAACTAGA 
ATCTTCACTA TCCAAATAGT ATATTCCATT TTCTTGCAAC TACGTATTAC 
TACATTCTGT TTGNCATATA TTTAAGATCG AGTAATAAAA AATTAATCAT 
CTTCATTGAT GTGAGCCAGA CAAAGAGTTC AATTTTTTTG GTTGAAAAGN 
ATGTTGATAC TTGATNCGTT NACCAAAACA CAAAAAAAAC AATGTGGGGN 
NGATNCGTTC CTTTNCCCCC CNNCANGAAN NNNNNCNNNN NTNTTNTGNA 
NGGGNNGAAA AAAANAACCC CCCNGNNNTT NNNNNNANAA AAAAAAAAAN 
NTTNTTTTTT TTTTNCCCCC CC

3 prime edge [+] show sequence

Chromosome: 4; Position: 221093 [Map]; Strand: c
- AT4G00480.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
  Distance: -1350; Region: intergenic
- AT4G00490.1 - [+] show detail - beta-amylase 2
  Distance: -1227; Region: intergenic

ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCTT 
GGTTGCATGC ACATTTATTT CCATAACGAC AAAACTTTGT GTTTAATTTT 
ATAAATTATT TCTGTTGGCA CAACACACTC ATTATAGCCA TATGTTTGTG 
TTTATATTTT CTATTTTCAT AGAAACAATT AATTTAATTT TAGATGCCCT 
AGACATTTTT TAAATGTATA TAATAATAAA ATTATAGTAT AAAAGTCTAT 
ATATTACCCT AAATTTTACA AAACATATAC AATCCTAACC AATGGGATC

AT4G00480.1

Model type: Protein coding
Short Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator Summary: MYC-related protein with a basic helix-loop-helix motif at the C-terminus and a region similar to the maize B/R family at the N-terminus
Computational Description: ATMYC1; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G63650.3); Has 1473 Blast hits to 1082 proteins in 120 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 1458; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G00490.1

Model type: Protein coding
Short Description: beta-amylase 2
Curator Summary: Encodes a chloroplast beta-amylase. The enzyme activity is very weak compared to BAM1 and BAM3. Mutant of BAM2 has no visible phenotype.
Computational Description: beta-amylase 2 (BAM2); FUNCTIONS IN: beta-amylase activity; INVOLVED IN: carbohydrate metabolic process, polysaccharide catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 14, conserved site (InterPro:IPR018238), Glycoside hydrolase, family 14 (InterPro:IPR001554), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 14B, plant (InterPro:IPR001371), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta-amylase 7 (TAIR:AT2G45880.1); Has 836 Blast hits to 835 proteins in 165 species: Archae - 0; Bacteria - 84; Metazoa - 0; Fungi - 0; Plants - 686; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).
Link: InterPro Scan - TAIR