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15-2801-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 4814155 [Map]; Strand: c
      • AT5G14880.1 - [+] show detail - Potassium transporter family protein
        Distance: -89; Region: promoter
    Flanking Genome Sequence: 15-2801-1 - 5-prime edge
    TAAAGATCAA AGGAATAACA TTTTTGGGAG ATGAGAAACT TCAAAAGATG 
    CGATTTAGTT TTTGTGGAAA AGTGGGGAAT TTAATTCGAT TGACGTTAGG
    AACTTTTTCT CTATGGATTC TTTGGGTTTG TGATTAATGG CATTGAAGGT
    ACAAAGGAAA AGGTTTGGCC AACAAAATCA AGAACCACAA AGAGAGAGAG
    AGAGAGGAAA CACACANACA AAACATATGA AAGAATGATT AAGATAACTG
    CCACAAATAT AACTGCAAAA TAACATACTC CTTAANAAAA TTAGTGGGGC
    CTTCTTTGTT ATGGAANAAT GNGCAAATCT TTTTATATGG TTAAGTATAT
    NACTATTATT ATATCAAAAT TCATTTTTGA CTATATATAG GNGATTGTGT
    CGAAATTCAC GTAANATCTT TGNGACATTT TTTCACACTA NNNAATTNTA
    CATGTNTTAT ANATNCCCNG C
  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 255876 [Map]; Strand: c
      • AT2G01570.1 - [+] show detail - GRAS family transcription factor family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 15-2801-1 - 3-prime edge
    TTCACAAGCC ACCAGATTAT NAATCTGTTT CCCTAAGCNA ACTTCAGACA 
    TGACTTTGTC TTGACTATTC GGAACTCCTT CCAACGAATC AAACAGAGTC
    GAATNATAAT GTAACGATTC AGNAAACCGG TCTAAGAAAA CCGGTNCGNT
    ATGGNNCGAT TNTTGCTTAA CCANNCGNGA AAAGGNGGGG GGGGGNGGGG
    GNGNGGGGAG NGCGGGGGNA NGNNNTTTTT TTTTTTNCGC GGGGTNCTTT
    TGGGANGGNN TTNNANGGNG NGGGCGAGNG NGGCCCGNCC CCCGNGGTNG
    TATNTTTTNT TAAAGGNGGG TGTNTAAAAA AGNTGAGANN NAGGNGGGNN
    NGGTTGGGAC NGAAGAGAAC AAAGNGNCNG NNAAAAANCN ANGNGGNGGA
    NGNANTNNNT GTNGTTTTNT TANTNNGNAN AGAGGGNNNN GGGGNNGGGG
    GGGNGNNGGT NGNGGGNNTG GNNGNGGGGG GAGGGNGGGN GGNNGNGGNG
    GNGGGAANGN TATNGGGGAG TGGTGGGGGG NNGNGTGNTG GGGGGGTGNG
    GGGNNCANTN ANNNACNTNT NNTNNANTGT NGAAGAGAAG AGAGNNAGCA
    AGTNATNANN TTGNGNTNGG TNTANNGTNA AANNGNNNNT NNNNATNNGN
    GNAGTTTTNN NNNTNATANA GNNATCATAG GGNNNGGNAN CAANTTCACG
    AGACGNNGNN TNNCNCGTNN CGAGGTANGG NGCGGAGNAT NGNGNNGNGG
    GTGGGGGGNG TNNGAGNNNN TAGNGTAGNA NAAGGGNATA GGGGNNNGGT
    AGATGAGAAA CGGGNGNGTN ANNNTTANTC GAANAAAANG AGAAAN

AT2G01570.1

Model type
Protein coding
Short Description
GRAS family transcription factor family protein
Curator Summary
Member of the VHIID/DELLA regulatory family. Contains homopolymeric serine and threonine residues, a putative nuclear localization signal, leucine heptad repeats, and an LXXLL motif. Putative transcriptional regulator repressing the gibberellin response and integration of phytohormone signalling. DELLAs repress cell proliferation and expansion that drives plant growth. The protein undergoes degradation in response to GA via the 26S proteasome. RGA1 binds to PIF3 and inhibits its DNA binding activity and thus affects the expression of PIF3 regulated genes. RGA may be involved in reducing ROS accumulation in response to stress by up-regulating the transcription of superoxide dismutases. Represses GA-induced vegetative growth and floral initiation. Rapidly degraded in response to GA. Involved in fruit and flower development.
Computational Description
REPRESSOR OF GA1-3 1 (RGA1); CONTAINS InterPro DOMAIN/s: Transcriptional factor DELLA, N-terminal (InterPro:IPR021914), Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor family protein (TAIR:AT1G14920.1); Has 2724 Blast hits to 2666 proteins in 317 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 4; Plants - 2709; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G14880.1

Model type
Protein coding
Short Description
Potassium transporter family protein
Computational Description
Potassium transporter family protein; FUNCTIONS IN: potassium ion transmembrane transporter activity; INVOLVED IN: potassium ion transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Potassium uptake protein, kup (InterPro:IPR018519), K+ potassium transporter (InterPro:IPR003855); BEST Arabidopsis thaliana protein match is: K+ uptake permease 6 (TAIR:AT1G70300.1); Has 3431 Blast hits to 3392 proteins in 1031 species: Archae - 13; Bacteria - 2398; Metazoa - 1; Fungi - 104; Plants - 790; Viruses - 4; Other Eukaryotes - 121 (source: NCBI BLink).
Link
InterPro Scan - TAIR