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15-2848-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1424553 [Map]; Strand: c
      • AT1G04990.2 - [+] show detail - Zinc finger C-x8-C-x5-C-x3-H type family protein
        Distance: -2914; Region: intergenic
      • AT1G05000.1 - [+] show detail - Phosphotyrosine protein phosphatases superfamily protein
        Distance: -1040; Region: intergenic
    Flanking Genome Sequence: 15-2848-1 - 3-prime edge
    GAAAACGGTA GAGGTATTTT ACCGACCGTT ACCGACCGTT TTCATCCCGC 
    CAGATGACTC AGATTAGTGA TTGTTCTTCC CACTTAGCAG AGTAATTGCT
    CTTTGTCCTT TGGAATCTCT CTCTCTCTCT TTTTATTTCT CTGTGTTTCG
    CTTGGAATCT ATATTTTCGC TATTTCCTGG AATGATGATA TATATGTATG
    TTAGTATGTA GTAGTCAATA TTTTTGTATA TTGTGAATAA TTGACTTTTT
    CAAGGTAAAT ATAGGTCAGA AACTTCAAAT TCAAAATATT AAATATTATA
    ATATTGGTGA AAATATATAG TCAAAAAATG ATTTTAGGTT CGGTTGATAA
    TTTATTCAAT GAGAGTGATT TACCCGAATA AGATGATTGT GTGTGAGCAA
    AAAGATTCCA CAATGATGCC AATTTAAGCT

AT1G04990.2

Model type
Protein coding
Short Description
Zinc finger C-x8-C-x5-C-x3-H type family protein
Computational Description
Zinc finger C-x8-C-x5-C-x3-H type family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: zinc finger nuclease 2 (TAIR:AT2G32930.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G05000.1

Model type
Protein coding
Short Description
Phosphotyrosine protein phosphatases superfamily protein
Computational Description
Phosphotyrosine protein phosphatases superfamily protein; FUNCTIONS IN: phosphatase activity, protein tyrosine phosphatase activity, phosphoprotein phosphatase activity; INVOLVED IN: dephosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase, active site (InterPro:IPR016130), Protein-tyrosine phosphatase, dual specificity phosphatase, eukaryotic (InterPro:IPR020428), Protein-tyrosine phosphatase, SIW14-like (InterPro:IPR004861); BEST Arabidopsis thaliana protein match is: Phosphotyrosine protein phosphatases superfamily protein (TAIR:AT2G32960.1); Has 669 Blast hits to 655 proteins in 149 species: Archae - 0; Bacteria - 50; Metazoa - 4; Fungi - 355; Plants - 145; Viruses - 0; Other Eukaryotes - 115 (source: NCBI BLink).
Link
InterPro Scan - TAIR