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15-2901-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 868782 [Map]; Strand: c
      • AT1G03470.2 - [+] show detail - Kinase interacting (KIP1-like) family protein
        Distance: -1108; Region: intergenic
      • AT1G03475.1 - [+] show detail - Coproporphyrinogen III oxidase
        Distance: 269; Region: intergenic
    Flanking Genome Sequence: 15-2901-1 - 5-prime edge 
    CTTAAGAACC CAAAACAAAA ACTTATTGCT CAAAGTGTTG AAATCTGAGC 
    TTTTCCAAAG AGAAGAGACA GTGATCAGCC CAGCCTAATG TAAGCCATTA 
    GGCCTCTTAG TATTTTTTTT TTTTTTTTTT NGGNNAAANC CCCNTTNGGG 
    GGNGGGGGAA AAANTNNNTT TTTTTTTNNT TTTTNTNNNT TTNNCCCCCN 
    GNANTTTTTN ANNNNCCCCN AAAAAANNAA AAAANTTTTT TTTTTNGGNG 
    GGGGGGNAAA AAAAANNNNC NGGGGGGGGG NNNCCCCGGG GGCNTNNANG 
    GGGGATGANT NANCCCNNNG GGGGGGGNGG NNCNCCCNNN CCCTNNAGAN 
    NNNNANNANG NNNNNNANNT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 875942 [Map]; Strand: c
    Flanking Genome Sequence: 15-2901-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCGG 
    GCTGGTCAAA ACCCTAGCCT GATTCTCTCT ATGCCAAGAA GTCGAAATTG 
    CCCCCGTTAG TTTATTGTTG CGGTTAGACG TTAACCGGCC CCCGTTAGGT 
    TTGTGATGGC TCAAATATGC CCGGCCTTAC AAAATTCAAA TTCATATGCG 
    AATGTTATGC CTTAACTTGT TACAAGATCA CAAATTACAA ACTTCTTTTG 
    CAGGTATTTT TGCATATTAT TTTCTTATAA TTTAAGAATA GTATTAAGTA 
    TAATTATACA ACCTTGATTT CGAAAATTGT GTATGAGCTT ACAAAAATTT 
    CATGAGCATG GTAATATGTC AATCTTTGAA CAAACACCAA CTACTACCTG 
    GTGAAACCTT CACTCCACTC TCCTTCATCT TCAATCTAAG TCTCTCTGCC 
    TCTTCTTGTC TTCCAACACT CATATATATC TTCCCCAACA ACACATAATT 
    CGCGGGATTC TCTGGCTCTA CCATCAACAA TTCTCTTGCA GCAATCTCTG 
    CTAGCTCAAT CTCACCGTAG TTCCTACAAG CTCCAAGCAA AGCCCCCCAT 
    GTCTTAACCG TTGGCTTCTN AGGCATAGCT TGAATCACTT TATAAGCT

AT1G03470.2

Model type
Protein coding
Short Description
Kinase interacting (KIP1-like) family protein
Computational Description
Kinase interacting (KIP1-like) family protein; CONTAINS InterPro DOMAIN/s: KIP1-like (InterPro:IPR011684); BEST Arabidopsis thaliana protein match is: Kinase interacting (KIP1-like) family protein (TAIR:AT2G47920.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G03475.1

Model type
Protein coding
Short Description
Coproporphyrinogen III oxidase
Curator Summary
Encodes coproporphyrinogen III oxidase, a key enzyme in the biosynthetic pathway of chlorophyll and heme, a tetrapyrrole pathway. Mutants express cytological and molecular markers associated with the defense responses, usually activated by pathogen infection.
Computational Description
LESION INITIATION 2 (LIN2); FUNCTIONS IN: coproporphyrinogen oxidase activity; INVOLVED IN: tetrapyrrole biosynthetic process; LOCATED IN: apoplast, chloroplast stroma, chloroplast, plastid; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Coproporphyrinogen III oxidase (InterPro:IPR001260), Coproporphyrinogen III oxidase, conserved site (InterPro:IPR018375); BEST Arabidopsis thaliana protein match is: Coproporphyrinogen III oxidase (TAIR:AT4G03205.1); Has 4884 Blast hits to 4875 proteins in 1228 species: Archae - 0; Bacteria - 2144; Metazoa - 115; Fungi - 160; Plants - 86; Viruses - 0; Other Eukaryotes - 2379 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G03502.1

Model type
Small nucleolar RNA
Short Description
snoRNA
Curator Summary
small nucleolar RNA
Computational Description
snoRNA
Link
InterPro Scan - TAIR

AT1G03506.1

Model type
Small nucleolar RNA
Short Description
snoRNA
Computational Description
snoRNA
Link
InterPro Scan - TAIR