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Mutant Lines
15-2927-1

15-2927-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 4; Position: 11214121 [Map]; Strand: c
- AT4G20960.1 - [+] show detail - Cytidine/deoxycytidylate deaminase family protein
  Distance: 477; Region: intergenic
- AT4G20970.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
  Distance: -1138; Region: intergenic

GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
CCCATCCTAC TTTCATCCCG TGTAACTGTA GAGTAATTTT TTAATACAAT 
AATGCTATGA AACAATAAGA AAGACTAAAA TTCATGCTAT TGTAAATCTT 
AAATTTGAAG TTAGGAACTT AGGATTGTTA AATCATAAAG TGATTTAAAA 
TTGACTATTG TATAGTGTTT ATTTCGTTCT TTCTTTCGAA TATCTCTAGA 
TATATCGGTT TTGACAAAAA CAAATCCAAC ATGGTTGATG TTTGTTGTCA 
GTTAGTTCAC ATTTCCACCA AAATCCAAAA AGAATTGTCA AATTTGTAAC 
GCAATCGACA TCAACAATCA GTTCTCATTG AATGTACTTC ACATTCTATT 
ACACATCCTT AATTTTTTTT ATGGGTTTTG GTTTATGAAC TCCAATTAAG 
AAAAAACATC TCATCTTAGG ATACCCATCA TGTGTAGGCC ATAGAAGGTC 
GAATCACATT CTCAACATGT GAAAATATTT TCTTTTGAAA ATACAACATT 
TTCTCAAAAA TCTGTTATCA ATCTATTAAT AATAGGATCT GTAAAACCTT 
AATAATACTA TGCTTTAAAA AAGGTAAATA TCATGACTTG TATTCATTTA 
TACATGAAAA CATCAAAAAT AGCCCTCTAG CAAAACGCTT CCACCTAATT 
GCTTAAACTG CAAATCTTTC ACATGCTTTG ATTCTAACCA CTTCATCGAC 
GCGATCTGGC TCTCATCTTT TGNGCTCCAT TCC

3 prime edge [+] show sequence
1. Chromosome: 4; Position: 11214131 [Map]; Strand: c
  - AT4G20960.1 - [+] show detail - Cytidine/deoxycytidylate deaminase family protein
    Distance: 487; Region: intergenic
  - AT4G20970.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
    Distance: -1128; Region: intergenic
Flanking Genome Sequence: 15-2927-1 - 3-prime edge
```
ATTGAAAACG GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCT 
CTCTTTATAA TGGTTGTTTC AATTGAGTTA ATCATTTACT ATTAATCTGA 
AAATTTGTAG TATGAATGTT ATTGTTGGTA CACAAATTGG TGATGGAACA 
AAAGATTAAG AGGATATCTT TTATGTCGA
```

AT4G20960.1

Model type: Protein coding
Short Description: Cytidine/deoxycytidylate deaminase family protein
Curator Summary: encodes diaminohydroxyphosphoribosylaminopyrimidine deaminase catalyzing the second step in the riboflavin biosynthesis
Computational Description: Cytidine/deoxycytidylate deaminase family protein; FUNCTIONS IN: hydrolase activity, zinc ion binding, diaminohydroxyphosphoribosylaminopyrimidine deaminase activity; INVOLVED IN: riboflavin biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: APOBEC/CMP deaminase, zinc-binding (InterPro:IPR016192), CMP/dCMP deaminase, zinc-binding (InterPro:IPR002125), Cytidine deaminase-like (InterPro:IPR016193), Riboflavin biosynthesis protein RibD (InterPro:IPR004794); BEST Arabidopsis thaliana protein match is: cytidine/deoxycytidylate deaminase family protein (TAIR:AT3G47390.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G20970.1

Model type: Protein coding
Short Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: defense response to fungus, regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G10586.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR