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15-2955-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 9579664 [Map]; Strand: w
      • AT2G22540.1 - [+] show detail - K-box region and MADS-box transcription factor family protein
        Distance: -210; Region: promoter
      • AT2G22540.2 - [+] show detail - K-box region and MADS-box transcription factor family protein
        Distance: -210; Region: promoter
    Flanking Genome Sequence: 15-2955-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCCCAAAC ACACACTTCT CTTCTCTCTC TCATCTCATT 
    GGAGACTTAT AAATCCTATT ACCTCACCAT ATCCAATAAC CACCACACAC 
    AGACCAATAT CCAAAAAAAA AACTAAAACT AAAAATATAA TATATATCGG 
    NTTTCTTTCC AAAAATAATC ATTTAANAAA CCCCATCATN TGGATNGTAT 
    TATAAAATTA ATAAACCTNT CCCNGAAAAT NTNTNATCCT TCACCAATNA 
    AAACCTTCTN AGGNCTTNTT CTNTCCTNGA CCTTNGGGGG GGAAAATTAA 
    ATNTNTTCCC TTAGCTTTTT TTCTCCTTNA GTTTTCTTCT TCTTCTGGNG 
    NTTTTTTTNT TTGGANCCTC TNNAATTCCC TGGGGGATNC ATGGACNANA 
    TAACNAGCCG GGGNGGGGNA CCNCGCGGGC CCTNNGGGGG GGGGTTTTAC 
    TNNACCCCCC GGGCCNNNGG GG

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 9461567 [Map]; Strand: c
      • AT2G22250.1 - [+] show detail - aspartate aminotransferase
        Distance: -659; Region: promoter
      • AT2G22250.3 - [+] show detail - aspartate aminotransferase
        Distance: -648; Region: promoter
      • AT2G22260.1 - [+] show detail - oxidoreductase, 2OG-Fe(II) oxygenase family protein
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: 15-2955-1 - 3-prime edge 
    AAGCTGAATC ACTAATTAAC AAGTAATGAC TTCATCTTTT TCATGCGAAT 
    GTTTCTTCCG GATTTACTAA TTGGGAAGAA GCAATGTTGC TTAAACTAAA 
    TTTGCATGCT TTAGGATTTA GTCTGCTTTT GAATGTGGTT TTCTTCACAA 
    AATGGTTTTT TGGTTCCAAG CCTTTTCAAT GTTTCATATA GGAAGAACTG 
    TTCAGGGCAC AAGCTAAAAG AAGTAACCTG ATAGTGACAC ATTCTCTGAC 
    AATGGTAAAG ATGATTCAGA TACCAAGAAA AGATTCCATT ACCATCAGGA 
    TCAGGTATTT GTCTCATTCA ATTACTACGT AAAAGACAAC TTGTGCTTAT 
    ACACTAAATA TGAGCTTCTA GAGAAGTAGG CCTCCTTTCT GAGTGATGTT 
    GTATGTTTGC TGTGTAGCGG AGGATGAGTT TGACATCGAT TGTGGCGGTG 
    GAGTCTCCTT CATCGAGCAA CGCTCCCTCT AGAAAAACCA TTGATCTTGG 
    CCATGGAAGC NGACCTCATT TACATTCAGA GGTTTCTTCC ATTTCAACAA 
    TCTTGGACTT TCTTCGATTA TCTCGACAAG CATATNCCTT GGACCAGGCC 
    TACTATTCGT GTCTTTGGTC GATCTTGCCT CCAGGTTTTN CCANTTNCCT 
    CTTTCTCTGT CATTNGTTTT TGNATACATA TGATCCATTG AANCTTNTTN 
    GNGTTTCCTC GGGGGTTCAT TGANTATT

AT2G22250.1

Model type
Protein coding
Short Description
aspartate aminotransferase
Curator Summary
Encodes a prokaryotic-type plastidic aspartate aminotransferase with glutamate/aspartate-prephenate aminotransferase (PAT) activity.
Computational Description
aspartate aminotransferase (AAT); FUNCTIONS IN: L-aspartate:2-oxoglutarate aminotransferase activity, pyridoxal phosphate binding, transferase activity, transferring nitrogenous groups, catalytic activity; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferases, class-I, pyridoxal-phosphate-binding site (InterPro:IPR004838), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (TAIR:AT1G77670.1); Has 49853 Blast hits to 49849 proteins in 3081 species: Archae - 1094; Bacteria - 34200; Metazoa - 783; Fungi - 895; Plants - 1391; Viruses - 0; Other Eukaryotes - 11490 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G22250.3

Model type
Protein coding
Short Description
aspartate aminotransferase
Curator Summary
Encodes a prokaryotic-type plastidic aspartate aminotransferase with glutamate/aspartate-prephenate aminotransferase (PAT) activity.
Computational Description
aspartate aminotransferase (AAT); FUNCTIONS IN: L-aspartate:2-oxoglutarate aminotransferase activity, transferase activity, transferring nitrogenous groups, pyridoxal phosphate binding, catalytic activity; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferases, class-I, pyridoxal-phosphate-binding site (InterPro:IPR004838), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (TAIR:AT1G77670.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G22260.1

Model type
Protein coding
Short Description
oxidoreductase, 2OG-Fe(II) oxygenase family protein
Computational Description
oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G22270.1); Has 1561 Blast hits to 1561 proteins in 515 species: Archae - 0; Bacteria - 839; Metazoa - 118; Fungi - 181; Plants - 86; Viruses - 14; Other Eukaryotes - 323 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G22540.1

Model type
Protein coding
Short Description
K-box region and MADS-box transcription factor family protein
Curator Summary
Encodes a nuclear protein that acts as a floral repressor and that functions within the thermosensory pathway. SVP represses FT expression via direct binding to the vCArG III motif in the FT promoter.
Computational Description
SHORT VEGETATIVE PHASE (SVP); CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 24 (TAIR:AT4G24540.1); Has 7469 Blast hits to 7448 proteins in 905 species: Archae - 3; Bacteria - 14; Metazoa - 824; Fungi - 324; Plants - 6168; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G22540.2

Model type
Protein coding
Short Description
K-box region and MADS-box transcription factor family protein
Curator Summary
Encodes a nuclear protein that acts as a floral repressor and that functions within the thermosensory pathway. SVP represses FT expression via direct binding to the vCArG III motif in the FT promoter.
Computational Description
SHORT VEGETATIVE PHASE (SVP); CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 24 (TAIR:AT4G24540.1); Has 7281 Blast hits to 7260 proteins in 901 species: Archae - 3; Bacteria - 13; Metazoa - 824; Fungi - 296; Plants - 6010; Viruses - 0; Other Eukaryotes - 135 (source: NCBI BLink).
Link
InterPro Scan - TAIR