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15-3206-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 10344007 [Map]; Strand: c
      • AT1G29600.1 - [+] show detail - Zinc finger C-x8-C-x5-C-x3-H type family protein
        Distance: -39; Region: promoter
    Flanking Genome Sequence: 15-3206-1 - 5-prime edge 
    GTGANAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCAA CCAAACTAAA TAAAACCCGA AACGTAAAAT 
    CAAATGAGAA ATCACAGTAA TAACATCGTA AGTGGTTAGC AAAAATATGG 
    ATTAGCACGT TAAGTTATTG TTCATTTTCT TTTTTACCTT TGTTTCTTCC 
    ATGGATCTAG ACTTTGTTCT TCCACAACAA CTTTTGTTAT GAGTTTTTCT 
    AGTCTCCTCA GATGTTTTTT AATTGCTTAT ATTCTCAAGA AATAAAATCA 
    AAGAATAGTT TGGTTCTTCA TATTCAATTT GAAAATCATG TTTCCATAAC 
    ATTGATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 10344011 [Map]; Strand: c
      • AT1G29600.1 - [+] show detail - Zinc finger C-x8-C-x5-C-x3-H type family protein
        Distance: -35; Region: promoter
    Flanking Genome Sequence: 15-3206-1 - 3-prime edge 
    TTTTAAAACG GNAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC 
    CAACTCCTTA CAATCTCATA AAACAGAGCC AAGAAATATG GCTAACGTTT 
    CGTTTACGTT TTGATTCTCA GGAACAAAAT AAGGAATTGA GGCCGAGTAG 
    ATTAGTGGGT AGATCTGATG AGAGAAATGG TAGGAGACAG GGAACAGAGC 
    AAAAGAAGAA GGTAAAGAAA CTGAACAAAA ACTTACTCTG TTATCTACTC 
    TGTATTTTGT GATGAAACAA GAGTCGACAC GATTTTTTTC AGGAGAAAGA 
    AGACTCGGGT TTTAGTGTAA GCGAAGAGGG TGAGATTCCT TTGCAACAAG 
    GGTCAAATAC TGACTCAGAC GCGCGGGATG ATCTGACACA ACAACAGAGA 
    GTGAGTGATG TTGTGATGCA GAGGAGAAGC CATGAAACAG AGTCGAGATT 
    ATGGCAAAGG GTAAAGAAAC TAAAGTCTTG CTCTTACACA ATATGCTTTG 
    TTTGATTTAA CGGTTTCTTT TGAATATTTG ATACATTAGG CTAGAACTCA 
    GTATAGGAGA GGAAGTGAAT CCAGAATGAT GTTTGATGGG AGAACTCAGT 
    GGAGTCACGC ACCGGTGCTA TCGAGTGCGT ATCCAGTTCG CCCCGGTGAA 
    GATGATTGTC TGTTTTATAT GAAAAACCAT CTGTGTGAAT GGGGAAGCGA 
    GTGTTGTTAC AAACATCCTT CTCTACAAGT GANAAAGAAA ACATTATCTC 
    AATTAATTTN GGCTAAGTAT AATTTGCAGT TTCCNTNTTT

AT1G29600.1

Model type
Protein coding
Short Description
Zinc finger C-x8-C-x5-C-x3-H type family protein
Computational Description
Zinc finger C-x8-C-x5-C-x3-H type family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cotyledon, leaf; EXPRESSED DURING: LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: Zinc finger C-x8-C-x5-C-x3-H type family protein (TAIR:AT1G29570.1); Has 792 Blast hits to 313 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 9; Plants - 764; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Link
InterPro Scan - TAIR