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15-3260-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 559946 [Map]; Strand: w
      • AT2G02180.1 - [+] show detail - tobamovirus multiplication protein 3
        Distance: -918; Region: promoter
    Flanking Genome Sequence: 15-3260-1 - 5-prime edge 
    NTCATATNGT NTNATCGACA GCTATTGNAC TCCCCAATCC AACNCAGCNA 
    CACACGAATG CCCTAGTCGG TGATTCATCA TGAAGATTAA TTCCTACATA 
    ATTAGTATTA TCTTCTAACA ATTCTCATTT TTCAAAGATT CAAGCCTGCA 
    GCTCCAAAGT GAGAATCACG GATTGTACTT AAATCGAGTG CGAATATAGC 
    TGATGTTTAG AATTTTTGGA AAATTTCTAC GTTTCGTAGA TATAATTTTT 
    TGGGATTACT AGCAAAACCC AAACCTCCAA AAATTCTTAA TCTCGAATTA 
    ATTATATTTT TTTTATCGTC GATTTATTAT TTATTACAAA TTATAAAAAC 
    TGTTATATAG TCGATTATAC TACGAACAAT TCCTTCCAAC CGTTATTAGA 
    TCTACGACAG CCGCCACCAC CTTTTCTTTT TTCATGCTTT TGATGGACAT 
    TTTTTCAACA ATTTTTTTTG CGTAGAATCC TAACANGCAG TTATAGTTGT 
    ACATCGTNGG AGATCTCTNA CATACTTACT TCCATTAATC TGCAAATCAG 
    CTAAATAAAT TTTCTATCAT NAAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 559831 [Map]; Strand: w
      • AT2G02170.2 - [+] show detail - Remorin family protein
        Distance: -1116; Region: intergenic
      • AT2G02180.1 - [+] show detail - tobamovirus multiplication protein 3
        Distance: -1033; Region: intergenic
    Flanking Genome Sequence: 15-3260-1 - 3-prime edge 
    TATATGATCA TCTTCTTGGT CAAATGGAAC CATTTTTGTC TTTGACCGTC 
    AAATAGGCAT GGCCTTACTT ATGGGCCTTC AAAGACANGC ATGAGCATCC 
    TATGGAGGCC AGGCCACCAC TTTTTTTTCT TCGTAATGAT AATATACNTT 
    TTTTTTGTGT GCCTAATTGT AAAATACTTC TATAGTCCTA ATTANAGGTG 
    TCGAAATGAT ATGTTAGGTC ATGANATGAG TCAACTCAGC TTGGTTTTTT 
    ATCAGTATGA ATGAAATTCA TTTAATAGAT GAGTTATATA ATCAAGTATA 
    ATTTANAGTA CAAATTATAT GAACGAGTTT TAACNAACAT GAGTTAATTT 
    ATGAATTANA CATTTTAAAA AATTAAAAGA ATATATATAC ATATATAACA 
    TATATAACTA AATACACTAA TATATATTTT TTTGTTGCCA AATTGTAATA 
    TACTTCTATA GTTCTAATCA ANAAATAATG TTTAGTGAAA AATATATATA 
    ACCTAAAATC TAGTANGTTN CTCAAAAAAA ATTGCATTTT TGATATCAAA 
    ATTTTATCAC TTTAGGTATC AACAAAAAAA ATTAATTGGT TGTAAANTAN 
    TTTAAGTACA AATTAAGANG TGCAAAACCA AAACAGAATT AAATTTAAGN 
    ANTTAACTAA AAAAAATGTG TTTTTTTGGG GGTCAAAGTN AAAAATTNAA 
    TNTTTGNAAA AANNCTTTTT TTTGGGGGNC AANAATA

AT2G02170.2

Model type
Protein coding
Short Description
Remorin family protein
Computational Description
Remorin family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Remorin, C-terminal (InterPro:IPR005516); BEST Arabidopsis thaliana protein match is: Remorin family protein (TAIR:AT1G30320.1); Has 3690 Blast hits to 2594 proteins in 496 species: Archae - 6; Bacteria - 904; Metazoa - 645; Fungi - 344; Plants - 595; Viruses - 5; Other Eukaryotes - 1191 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G02180.1

Model type
Protein coding
Short Description
tobamovirus multiplication protein 3
Curator Summary
Necessary for the efficient multiplication of tobamoviruses.
Computational Description
tobamovirus multiplication protein 3 (TOM3); INVOLVED IN: viral replication complex formation and maintenance; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1084 (InterPro:IPR009457); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1084) (TAIR:AT1G14530.2); Has 262 Blast hits to 261 proteins in 45 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 200; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).
Link
InterPro Scan - TAIR