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Mutant Lines
15-3281-1

15-3281-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 5; Position: 23169731 [Map]; Strand: w
- AT5G57180.1 - [+] show detail - chloroplast import apparatus 2
  Distance: 0; Region: intron1 (CDS)
- AT5G57180.3 - [+] show detail - chloroplast import apparatus 2
  Distance: 0; Region: exon1 (3UTR)
- AT5G57180.2 - [+] show detail - chloroplast import apparatus 2
  Distance: 0; Region: intron1 (CDS)

GTTCTCATTA ATGCTGAATT AGTAATTNAT TAGCTATGAT ATAGTTTGAA 
GTATCTGACA AGAATTTATT ANATTNTGTG GAAAGTTCTT ATTAATAACT 
TTTCTTGTAA CGTATTTTGA AGAATAATTA TTAACCCTTT GACTTTGGTA 
CATAGTCTTC TTTTTATTAT AAATAACATT TTTTTCTGTG ATGACTTTCA 
ATCAATTAAG AAAAAAAAAG CTGCTTTTTA TTTGTCCAAT GAAAACTTTA 
TANACTGNGC ACGTGAATTT TCACGTATAG GATAAATGAG GAGGTTCAAA 
ATTTATTTTG TANATATCCG TTTCGTCNAA TACTCCTTTT AGCATAAAGT 
CTAGTAGTCT ACAAAATAAG TTAACTANAA ATTCATTTTT GTCAATNGAT 
TAGTATTTTG NGTTATTAAT AATGTNGAAC ATGAACTAAT GTGGCGTGTG 
TGTTTTGGGG CAGGCTAAAT TAGCTCANAT TGATTTGTTC GGAGACAGNG 
GAATGCGAAA AGCAAGTGTT TTGAGGTACA AAGAGAAACG TCNAACTCGT 
CTTTTTTCGA ANAAAATTCG ATACCAAGTT CNCAAACTCA ATGCTGATCA 
ACGTCCTNNA ATGAAGGGAT CTAACCCACC TTANTCAGNG GGTAAAAACA 
TGTAGGNTTT TTTACCATCC CTNNAAAATT NGTTTNGGAA CCNCCNTAAT 
AAAACNAGCT TTAGTTTTCA AATTAAAGN

3 prime edge [+] show sequence
1. Chromosome: 5; Position: 23169615 [Map]; Strand: w
  - AT5G57180.1 - [+] show detail - chloroplast import apparatus 2
    Distance: 0; Region: intron1 (CDS)
  - AT5G57180.3 - [+] show detail - chloroplast import apparatus 2
    Distance: 0; Region: exon1 (3UTR)
  - AT5G57180.2 - [+] show detail - chloroplast import apparatus 2
    Distance: 0; Region: intron1 (CDS)
Flanking Genome Sequence: 15-3281-1 - 3-prime edge
```
ATGAGAACAC NNTCCTCANC ANCCACCGTG GCAGAATNCT AATGGCCATN 
AACAGAATCC CGNAATAATT AATTACNTGT TTCAAACTAA CCATTAACTA 
AAGAAAAATA AACATAGAAA ATATCGAATT TTAACGGCTG AAGGATTTGA 
GATTAAGAAG AGATTAGNGT TAAACATACA TTGACNTCGA TAGCTTCCTG 
AATCTCGTCG GGAAACGGCG ACGTTNTATC AGACCAAGCT
```

AT5G57180.1

Model type: Protein coding
Short Description: chloroplast import apparatus 2
Curator Summary: Transcription regulator responsible for specific upregulation of the translocon genes atToc33 and atToc75 in leaves. Involved in protein import into chloroplast.
Computational Description: chloroplast import apparatus 2 (CIA2); CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: CCT motif family protein (TAIR:AT4G25990.2); Has 1391 Blast hits to 1370 proteins in 95 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 7; Plants - 1340; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G57180.2

Model type: Protein coding
Short Description: chloroplast import apparatus 2
Curator Summary: Transcription regulator responsible for specific upregulation of the translocon genes atToc33 and atToc75 in leaves. Involved in protein import into chloroplast.
Computational Description: chloroplast import apparatus 2 (CIA2); CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: CCT motif family protein (TAIR:AT4G25990.1); Has 1820 Blast hits to 1799 proteins in 111 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 7; Plants - 1718; Viruses - 0; Other Eukaryotes - 89 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G57180.3

Model type: Protein coding
Short Description: chloroplast import apparatus 2
Curator Summary: Transcription regulator responsible for specific upregulation of the translocon genes atToc33 and atToc75 in leaves. Involved in protein import into chloroplast.
Computational Description: chloroplast import apparatus 2 (CIA2); BEST Arabidopsis thaliana protein match is: CCT motif family protein (TAIR:AT4G25990.1); Has 102 Blast hits to 81 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 7; Plants - 54; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).
Link: InterPro Scan - TAIR