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15-3299-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7483737 [Map]; Strand: w
      • AT1G21370.2 - [+] show detail - unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2...
        Distance: -44; Region: promoter
      • AT1G21370.1 - [+] show detail - unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2...
        Distance: -145; Region: promoter
    Flanking Genome Sequence: 15-3299-1 - 5-prime edge 
    CGTGAAAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CATATGGGAT CTCATAGGCT AATTACATAT GGACCAAGAT 
    GTGGATCTGG GCTTTTAAAA CTTCCATGAT CTCATAACAA AGTCTCTTCC 
    TCGCTCACGT CGAAAACATC TCCCCGAAGT TTCTTATTAC TTACCTTGTT 
    CAAATCGTTA ATTGTCCTTT AAAACTTCGA TCTTTGTTCA ACAAAAATAA 
    TCTCAGACTC TCGGTCAACG GAATCGAAGC AAAACTCTGC CTCTAGTTCC 
    GTANAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 6047450 [Map]; Strand: w
      • AT2G14270.1 - [+] show detail - Cytochrome C oxidase polypeptide VIB family protein
        Distance: 1405; Region: intergenic
      • AT2G14280.1 - [+] show detail - transposable element gene
        Distance: -1550; Region: intergenic
    Flanking Genome Sequence: 15-3299-1 - 3-prime edge 
    TTTAAAACGG NANAGGTATT TTACTGACCG TTACCGACCG TTTTCATCCC 
    TGTCTGAGAA TATTACACTC TAAGGCACTT TTCTCAAACA ATNNCCAAGA 
    TACGACACTT TCAAAACACA AGGCACTTCC AATAAAAAAA TTGTCCTTTC 
    TGTCCTCAAA CCAATTTTGG TTTAATTTTT TAATCTCAAT CTCTAAACTA 
    AAACCAATTT GTGAGAAACC TCTCTTTCTC ACTCAATCCT TCACGACGAT 
    TTTACAATTT CATTTATCTG GGCAGTTAAA ATCATCACAA CGCCGATAAC 
    ATCATCTCGA CTCCGGCGAT CATCCCGACG AGTTTTCTAC CGGCAAAGTC 
    ATTTCCTCGT CCCTCTCCCG TCGTTATCGT CAACAAAGCT

AT1G21370.1

Model type
Protein coding
Computational Description
unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF218 (InterPro:IPR003848); Has 160 Blast hits to 160 proteins in 86 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 102; Plants - 44; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G21370.2

Model type
Protein coding
Computational Description
unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF218 (InterPro:IPR003848); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G14270.1

Model type
Protein coding
Short Description
Cytochrome C oxidase polypeptide VIB family protein
Computational Description
Cytochrome C oxidase polypeptide VIB family protein; BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT1G07160.1); Has 31 Blast hits to 31 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G14280.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 3.1e-16 P-value blast match to GB:AAC34906 reverse transcriptase (LINE-element) (Forficula auricularia)
Link
InterPro Scan - TAIR