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15-3300-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 14176237 [Map]; Strand: w
      • AT5G36070.1 - [+] show detail - transposable element gene
        Distance: 2502; Region: intergenic
      • AT5G36075.1 - [+] show detail - transposable element gene
        Distance: 1040; Region: intergenic
    2. Chromosome: 1; Position: 8794839 [Map]; Strand: w
      • AT1G24967.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    3. Chromosome: 1; Position: 12823678 [Map]; Strand: c
      • AT1G35060.1 - [+] show detail - transposable element gene
        Distance: 891; Region: intergenic
      • AT1G35080.1 - [+] show detail - transposable element gene
        Distance: 2447; Region: intergenic
    Flanking Genome Sequence: 15-3300-1 - 5-prime edge 
    GTTCTATCTG TATACAATTA CGTTGAATAG AGATTTGTAT CATAAAATAT 
    ATTAATAATT GGTGCAATCA AGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8794713 [Map]; Strand: w
      • AT1G24967.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 15-3300-1 - 3-prime edge 
    TCCAATTTTC TATTATCTTA TGTGTAAAAT ATTTCAGTTC TTATAATTAG 
    TTATTGCTGA AACATATCCT GATTGTATCA CAAACATCTG CAATACCGTT 
    TGCTTATCCA TAAAGCCATA TCCATATGGA GATGTTTTTT TAACAGTTAA 
    AGTAGTTCTA ATCCATTTTG AGTACTTGTA TTTGTTTTTT TTAGATTGGG 
    TCATAACAGG ACATGTTGAT CTAATCCAAT GAAAAATTGT ATTTTTTGAA 
    TTTAAGTTGN NAATATTTCA GTNCTTATTG NAAAACTAGT TGCTATGTTT 
    TTTTGTAAAA TATTTCAGTT CTTATAATTA GTTATTGCTG ATTTTATATC 
    CTGATTGTAT CGGAATCCTC TGCAATACCG TTTTCTTATC CATAAAGCCA 
    TATCCATATG GAGATGTTTT TTAAACAGGT AAAGTAGTTC TAATCCATTT 
    TTAGTACGTG TAGTTGTTTT TTTTANATNG GGTCATAACA GGACAAGTTG 
    ATCTAATACA ATGANAAATT TTATTTGAAA ATATTNCATT TCTTATTGNA 
    AGACATTCCC ATAAATGTTT TTCCGTTTCT GTAACCTAGT TCTTGANGTA 
    CCAAATATAA GNATATATGT TTATTNATTG GGTNAAAANA GNCTATAATT 
    ANCATATATT GCTAAACCGN AAATATGGGG CAANCCCGTT TAACTATCCC 
    TAAACNCTTA TCCNTATGGA GANGANGNTT NACATGA

AT1G24967.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
Mutator-like transposase family, has a 1.2e-61 P-value blast match to Q9S9L6 /322-461 Pfam PF03108 MuDR family transposase (MuDr-element domain)
Link
InterPro Scan - TAIR

AT1G35060.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
Mutator-like transposase family, has a 1.9e-61 P-value blast match to Q9S9L6 /322-461 Pfam PF03108 MuDR family transposase (MuDr-element domain)
Link
InterPro Scan - TAIR

AT1G35080.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G42490.1)
Link
InterPro Scan - TAIR

AT5G36070.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G35080.1)
Link
InterPro Scan - TAIR

AT5G36075.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
Mutator-like transposase family, has a 3.2e-61 P-value blast match to Q9S9L6 /322-461 Pfam PF03108 MuDR family transposase (MuDr-element domain)
Link
InterPro Scan - TAIR