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15-3307-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 3628 [Map]; Strand: c
      • AT4G00020.2 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: intron21 (CDS)
    Flanking Genome Sequence: 15-3307-1 - 3-prime edge
    TCTATGGTGT TAACCACATA ACATCGTATA GTTCATATAT GTGGTCATGC 
    AATACATCTA CTTTGTGTAC CTGAAGATAC AATAATATAG TTAGGCAAAG
    TGCATTTCAC CATTACTGTT CCGGTCATAG GAAGTTTCCC TGATAGAAAA
    AAAAAATANC NCAANGTTGC TCTGTCATAA GGAGTTGTAA ACTTGACAAT
    GTCAAATCCT TTTTTNTTTG ATAACATTCA TCTTCAAATT
  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 3514 [Map]; Strand: c
      • AT4G00020.2 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: intron21 (CDS)
    Flanking Genome Sequence: 15-3307-1 - 5-prime edge
    GNCATAGACA TACAGCTGCN NGGTAAACTG AGTAGGTTGN CTNCGGCTTT 
    GACCAACNAA NNGTTCAAAA AAATCTGNGA AATTATTTNC TATTATTAAA
    AAANAANAAN TATTTTTTCC TGCTTGTNTA NTAAAAAAAT ATTNNATGTA
    CAATATAAAT ATATTTTTCT CAATTTCAAA ACTAAACTAA AAATATAATA
    AAACAAAAAA CTTGCAATTT TAAATCTAAC ATTTTTTTTT TCCTTNTAAA
    ANCTTTNTTA AAACTTNAAN ANANNTCGNG GTTNNCAANA NGATAAANAA
    AATTNGGNCN NGAGGGAAAC ANANNCCAAG GNGTTTCCGN NGAAANAGCT
    TTNTNANCTA AAANANCCGC NCGGGCNTTT NGTNCCCNAG GCTNGANGGG
    GAACTTTNCN GANGGNAAAG TGGGGATN

AT4G00020.2

Model type
Protein coding
Short Description
BREAST CANCER 2 like 2A
Curator Summary
Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description
BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 319 Blast hits to 211 proteins in 92 species: Archae - 0; Bacteria - 11; Metazoa - 140; Fungi - 22; Plants - 61; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).
Link
InterPro Scan - TAIR