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15-3311-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 18001086 [Map]; Strand: c
      • AT3G48550.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TA...
        Distance: 6352; Region: intergenic
      • AT3G48560.1 - [+] show detail - chlorsulfuron/imidazolinone resistant 1
        Distance: 226; Region: intergenic
    Flanking Genome Sequence: 15-3311-1 - 5-prime edge
    CTCATATGGG CCGTGGTTTC CAAATTAAAT AAAACTACGG ATGTCAGTCT 
    GAGAAGTAAA ATCAACTGTG TCCACATTAT CAGTTTTGTG TATACGATGA
    AATAGGGTAA TTCAAAATCT AGCNTTGATA TGCCTTTTGG TTCATTTTAA
    CCTTCTGTAA ACATTTTTTC AGATTTTGAA CAAGTAAATC CAAAAAAAAA
    AAAAAAAAAN TNNNNCCCCC CCCCNAANNT TTTTNANNNN NAAAAAANGN
    CNAAAAAANT TGGGTTTAAA AAAAAAANCC NAAAACCTNA AAAANNNTTN
    NNAANNGGNG GNNNAAAAAA NNCCGNANGG GGGGNTNAAA AAAATTTTTT
    NNTTTGGGGN NCCCCNGGNC CCAAANGGGN ANNCCAAAAC CCNTTTTNAA
    ANTNGGGNGG GGGGNNNTTT TNAAAANNTT TTTTTTTTTT TTTNNGGGAA
    AAAANNTTCC NNCCCGGGGG GGGGGANNAC CNCNNCCCCC NNGNGGGGNG
    NGNGNNNNCC NNNCCNNNNG GGGGNNGGGG GNNNNANCGN TTTCNGCNGN
    GNNNGNCNNC CCCCCCNCCC CCCCCCCCNN NNNNCG
  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 18001202 [Map]; Strand: c
      • AT3G48550.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TA...
        Distance: 6468; Region: intergenic
      • AT3G48560.1 - [+] show detail - chlorsulfuron/imidazolinone resistant 1
        Distance: 110; Region: intergenic
    Flanking Genome Sequence: 15-3311-1 - 3-prime edge
    CATATGAGCA CATTTCAATT AAAAACCAAT GGTAAGAGCA TTTTCCATGC 
    AAGATTCGAG AGATATTAAC CCAGTGACTG TTAAAACAGC TTAGAACCCT
    AATAACGAAT TTCAATTACT CAATTTACCA TTCGCATTTC GCAATAACCA
    AACNTGAGCC AGTCACAAGG AGTAAACCGA ACCGGATTAT TTATTTATAA
    AATGAAAGAA AGGAAACCAA ACAACAACAG CAGTAGTAGT CTGACGTAAA
    CCAAAAAGCA GGCAGATCAA CAACTAAAAG AAACTCAAAT TACCAAAACA
    AACAGGAAAT TGCAAACTAA GTTTTTTTAC CATATGCATA CAAAGACCAT
    AAAAGGTTCT GATAATCACC GGTTTCATCT CTCAGTATTT AATCCGGCCA
    TCTCCTTCCG TTATGACATC GTTGAAAGTG CCACCACTCG GGATCATCGG
    CAACACATGT TCTTGGTGCG GACAAATCAC ATCCAACAGG TAAGGTCCTG
    GTGTATCCAG CATTGTCTGA ATAGCTTCTC GGAGATCTGC TTTCTTTGTC
    ACCCTCGCCG CTGGAATCCC GCAAGCTGCT GCAAACAGCA ACATGTTCGG
    GAATATCTCG TCCTCCTGAG CCGGATC

AT3G48550.1

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT2G01940.3); Has 78 Blast hits to 78 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G48560.1

Model type
Protein coding
Short Description
chlorsulfuron/imidazolinone resistant 1
Curator Summary
Catalyzes the formation of acetolactate from pyruvate, the first step in valine and isoleucine biosynthesis. Requires FAD, thiamine pyrophosphate and Mg. Inhibited by the sulphonylurea herbicide, chlorsulphuron, and the imidazolinone herbicide, imazapyr. The obtained crystal structure of acetohydroxyacid synthase AHAS, EC 2.2.1.6)in complex with herbicides of the sulphonylurea and imidazolinone family reveals the molecular basis for substrate/inhibitor binding.
Computational Description
chlorsulfuron/imidazolinone resistant 1 (CSR1); FUNCTIONS IN: acetolactate synthase activity, pyruvate decarboxylase activity; INVOLVED IN: branched chain family amino acid biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TPP-binding enzyme, conserved site (InterPro:IPR000399), Thiamine pyrophosphate enzyme, central domain (InterPro:IPR012000), Acetolactate synthase, large subunit, biosynthetic (InterPro:IPR012846), Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain (InterPro:IPR012001), Thiamine pyrophosphate enzyme, C-terminal TPP-binding (InterPro:IPR011766); BEST Arabidopsis thaliana protein match is: Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (TAIR:AT5G17380.1); Has 30963 Blast hits to 30605 proteins in 2694 species: Archae - 488; Bacteria - 17421; Metazoa - 266; Fungi - 871; Plants - 599; Viruses - 25; Other Eukaryotes - 11293 (source: NCBI BLink).
Link
InterPro Scan - TAIR