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15-3482-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2216213 [Map]; Strand: c
      • AT3G07010.1 - [+] show detail - Pectin lyase-like superfamily protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 15-3482-1 - 5-prime edge 
    GNGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCAT CATCATTATT GTACATTGGT TTTAGACATT 
    AGACATCCAT TGCAGGTTTT TAAGCTCAGT GTAGCTTAAT TTTACGTTTT 
    CTAGTTCATG CAACCAAGCC ATTGAGCTTA AATAGTTCAT CATATAACCT 
    ACTTAAGAGG TGTTTTTGGG TTTCGATAAT TGGGTTTTCT AAAAACGAAA 
    TTTTGATCAA TCAGGTTATA AATGAGACAA TAATTGTTAG ATCGTATAAT 
    TAATGTTTTT CAGGTCCAAT GAAACATGGC ATGAACATGC AGTTGAGAAC 
    CCAGATGAAG TCGCTGCCAT GGTGGACATG TGAGTTTTCT CTATAAAACA 
    AAAGATATTC CACGAATATA TTTACAACTA TCTTATGTGA TGTCTTGTAT 
    ATAAATTAGT CTATGGAAAA AAACTCAAGT CTTACTCGCA TAAATAAAAT 
    AAAAAAGAAA AGAAAATAAA ACTCTTACTT CCAGGGTATA TCATCTCGTG 
    AAACTTTTCT GAAAATGAAA TAATTAATCC ATTCATGTTT GATATTTCTT 
    TTAATCGAGA AAAAACAGGT AAGTAGAATT TATGACAAAA CAGAGCTCAC 
    ATGAAGTTCT CTTGAAAAAG TTTGACACAT CACTTTCATA TTCTAGTCAA 
    AATGGGTCCT CCCCAAAGCC ACATTCCTCT GACTATTCCC TTTTCTTTCT 
    CCTTTNNCAT TATCAA

AT3G07010.1

Model type
Protein coding
Short Description
Pectin lyase-like superfamily protein
Computational Description
Pectin lyase-like superfamily protein; FUNCTIONS IN: lyase activity, pectate lyase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT5G48900.1); Has 1586 Blast hits to 1578 proteins in 262 species: Archae - 0; Bacteria - 663; Metazoa - 0; Fungi - 221; Plants - 695; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Link
InterPro Scan - TAIR