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15-3575-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7252390 [Map]; Strand: c
      • AT1G20850.1 - [+] show detail - xylem cysteine peptidase 2
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 15-3575-1 - 5-prime edge 
    GTCTCATCGA TGTGCTTTAG ATTATCCTTG AAAACTTCGA ACCTAAGAAA 
    CTTCTCTTCA ACGGTTTCAT AAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7252506 [Map]; Strand: c
      • AT1G20850.1 - [+] show detail - xylem cysteine peptidase 2
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 15-3575-1 - 3-prime edge 
    GATGAGACTA ACAAGAAAGG NAAAAGCTAC TGGCTCGGGC TCAACGAGTT 
    TGCGGATTTG AGCCATGAGG AGTTCAAGAA AATGTATTTA GGGCTCAAGA 
    CTGATATAGT GAGACGCGAT GAAGAAAGAT CTTACGCAGA GTTCGCTTAC 
    AGGGACGTCG AAGCTGTTCC TAAGTCTGTT GACTGGAGAA AGAAAGGAGC 
    TGTGGCGGAA GTTAAGAACC AGGGCTCTTG TGGTAATATC AAATCTTGGT 
    CTCTGATCTG TTAATGGAAG TTTTGACTCT TAACTAAACC ATTTAACTTT 
    AAAAAACTTG TTTCGCAGGA AGTTGTTGGG CGTTTTCGAC AGTAGCANCT 
    GTCGAAGGTA TAAACAAGAT TGTGACAGGA AACTTGACAA CATTGTCAGA 
    ACAANTAACT CATAGACTGT GACACGACCT ACAACAATGG CTGCAACGGT 
    GGTCTCATGG ACTATGCCTT TGAGTACATT GTTAAGAACG GAGGTCTACG 
    CAAGGAAGAA GATTATCCTT ACTCTATGGA AGAAGGAACT TGCGAGATGC 
    ATAAGGTCCC ATTCTAATAT CAACTCTTGG TCTCTGATGT GTTAATGAAA 
    GGTGGTCCCA TTCTAATTAT CTCTGTTTTT GAAAACAGGA TGAATTCTTG 
    AAACAGTAAC CATTAATGGA CACCAAGACG TACCTTACTA ATGATGAGAN 
    GAGTCTCTTN ANGGCATTGG CTCATCANCC CTCTNAGTGN CNNCATTGAT 
    GCATCTNNNA AA

AT1G20850.1

Model type
Protein coding
Short Description
xylem cysteine peptidase 2
Computational Description
xylem cysteine peptidase 2 (XCP2); FUNCTIONS IN: cysteine-type peptidase activity, peptidase activity; INVOLVED IN: proteolysis, developmental programmed cell death; LOCATED IN: cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: xylem cysteine peptidase 1 (TAIR:AT4G35350.1); Has 7701 Blast hits to 7638 proteins in 709 species: Archae - 59; Bacteria - 219; Metazoa - 3282; Fungi - 4; Plants - 1889; Viruses - 133; Other Eukaryotes - 2115 (source: NCBI BLink).
Link
InterPro Scan - TAIR