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15-3630-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 18000368 [Map]; Strand: w
      • AT3G48550.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TA...
        Distance: 5634; Region: intergenic
      • AT3G48560.1 - [+] show detail - chlorsulfuron/imidazolinone resistant 1
        Distance: 944; Region: intergenic
    Flanking Genome Sequence: 15-3630-1 - 5-prime edge
    CCCGGGGATC CTCTAGATAT TGTTTTTGTT TCACATAAAT GTCGTTTTGG 
    ATTATTCATG TAATATTTTA AACTAAAGTA CAATTTTTGA CTACTTTAGT
    TTACTAGTTA AGCTTTTATT TTTTTGACTA ACCATTGAAT GATGAAGAGA
    TCAACGCATC ATATTTACAA CTTACATAGT CTTTTGGAAG TGTAAATTGC
    TAATACTACC TAAAATATAT CTATAATTAA CTAATATTTT TTCGTCAATT
    ATAATAGATC AATTAAAAGG CTATCAAAAG GAAAAAAATG AAATCCACAT
    CCTGCCATCA TAACCTCATG CTGGAAAAAG AAATGAAAAA ATATAAAAAA
    TTTCTTTTGT TTATTAAATT TACAACTTTA ATACTAGTTT CTTTTCTATT
    TTTTAAAAGC TTTTGTCACT TACTTAAAAA AAAAAANNTT TTNAAAANNT
    NCCNNCTNCN AAGGNCGNAT AAGGNCTTNG GNATTCCCTT TTGGGANNNN
    GGNAACCCNA ANNNAAAAAA NTTNTTTTAN NCCCCANTCN NGTNTTTTTN
    NNNCCTTAAA TTNAAAANAG TTNTTTNNGT TTTAANCTTT TTTTTTTTAA
    CCCAAANGTT TNAACCTTTT TTTAAACNTN AAAAAANTTA NGGGGGNGGT
    GGAAATTTTT TTTTTTTTTT TNGGGNNNCC CNNNNNAAAN NNNAAAAAAN
    GGNNCCAAAG
  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 18030062 [Map]; Strand: c
      • AT3G48660.1 - [+] show detail - Protein of unknown function (DUF 3339)
        Distance: 0; Region: intron1 (CDS)
      • AT3G48670.1 - [+] show detail - XH/XS domain-containing protein
        Distance: -719; Region: promoter
      • AT3G48670.2 - [+] show detail - XH/XS domain-containing protein
        Distance: -806; Region: promoter
    Flanking Genome Sequence: 15-3630-1 - 3-prime edge
    ATGNAAACGG TCAGNAGTNT TTTACCGACC GTTACCGACC GTTTTCATTC 
    CNCGGGTACC GAGCTCGAAT TCGTAATCAT GTCAATGCTG TTTCCTGTGT
    GAAATTGTTA TCCGCTCACA ATTCCACACA ACATACGAGC CGGAAGCATA
    AAGTGTAAAG CCTGGGGTGC CTAATGAGTG AGCTAACTCA CATTAATTGC
    GTTGCGCTCA CTGCCCGCTT TCCAGTCGGG AAACCTGTCG TGCCAGCTGC
    ATTAATGAAT CGGCCAACGC GCGGGGAGAG GCGGTTTGCG TATTGGAGAC
    CTCAATTGCG AGCTTTCTAA TTTCAAACTA TTCGGGCCTA ACTTTTGGTG
    TGATGATGCT GACTGGACAA GACATACCAG GAGAGATGTA GAATCTACGA
    TTGGGGCCAA CGTTGGAGAC ACGAAGAACA AATTTGGCAA CAGGAGGTTG
    CTCTTTAGAT ACTCGACACC ACGGGAACAC ACAAAAACAG GTCACCGTAA
    AAACTGTGTT CGTTAGCTCA TTGTAAATTG CAGTATATGG CATAAACAAT
    GTTTCTACAA ATTCCAAGAA CGTAAGAATC AAGACAATAA AATGTGACTA
    TATCAAGAAA ATAAATTTAC GCCACACTAC AAGTAATTTA CTTAACTAAA
    GTTTCATCCA CTTAAATGAA AAAGTTGATT TGGATAGAAC AAAAGACGTA
    ATATTCGATG TGTTCTCTCT CTCTCCCATC TTTACTTTTA TTGACTTTTT
    ATTTTCACTT TTATGTGTGA TGTAAAAATA AAAAGN

AT3G48550.1

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT2G01940.3); Has 78 Blast hits to 78 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G48560.1

Model type
Protein coding
Short Description
chlorsulfuron/imidazolinone resistant 1
Curator Summary
Catalyzes the formation of acetolactate from pyruvate, the first step in valine and isoleucine biosynthesis. Requires FAD, thiamine pyrophosphate and Mg. Inhibited by the sulphonylurea herbicide, chlorsulphuron, and the imidazolinone herbicide, imazapyr. The obtained crystal structure of acetohydroxyacid synthase AHAS, EC 2.2.1.6)in complex with herbicides of the sulphonylurea and imidazolinone family reveals the molecular basis for substrate/inhibitor binding.
Computational Description
chlorsulfuron/imidazolinone resistant 1 (CSR1); FUNCTIONS IN: acetolactate synthase activity, pyruvate decarboxylase activity; INVOLVED IN: branched chain family amino acid biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TPP-binding enzyme, conserved site (InterPro:IPR000399), Thiamine pyrophosphate enzyme, central domain (InterPro:IPR012000), Acetolactate synthase, large subunit, biosynthetic (InterPro:IPR012846), Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain (InterPro:IPR012001), Thiamine pyrophosphate enzyme, C-terminal TPP-binding (InterPro:IPR011766); BEST Arabidopsis thaliana protein match is: Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (TAIR:AT5G17380.1); Has 30963 Blast hits to 30605 proteins in 2694 species: Archae - 488; Bacteria - 17421; Metazoa - 266; Fungi - 871; Plants - 599; Viruses - 25; Other Eukaryotes - 11293 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G48660.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF 3339)
Computational Description
Protein of unknown function (DUF 3339); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3339 (InterPro:IPR021775); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF 3339) (TAIR:AT5G63500.1); Has 274 Blast hits to 269 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 274; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G48670.1

Model type
Protein coding
Short Description
XH/XS domain-containing protein
Curator Summary
Encodes IDN2 (INVOLVED IN DE NOVO 2), a double-stranded RNA-binding protein involved in de novo methylation and small interfering RNA (siRNA)-mediated maintenance methylation. IND2 is a component of the RNA-directed DNA methylation pathway.
Computational Description
INVOLVED IN DE NOVO 2 (IDN2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion, chromatin silencing, DNA methylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Domain of unknown function XS (InterPro:IPR005380), Domain of unknown function XH (InterPro:IPR005379), Domain of unknown function, putative Zinc finger, XS/XH (InterPro:IPR005381); BEST Arabidopsis thaliana protein match is: XH/XS domain-containing protein (TAIR:AT3G12550.2); Has 76122 Blast hits to 43343 proteins in 2243 species: Archae - 1068; Bacteria - 10039; Metazoa - 36284; Fungi - 4878; Plants - 2932; Viruses - 220; Other Eukaryotes - 20701 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G48670.2

Model type
Protein coding
Short Description
XH/XS domain-containing protein
Curator Summary
Encodes IDN2 (INVOLVED IN DE NOVO 2), a double-stranded RNA-binding protein involved in de novo methylation and small interfering RNA (siRNA)-mediated maintenance methylation. IND2 is a component of the RNA-directed DNA methylation pathway.
Computational Description
INVOLVED IN DE NOVO 2 (IDN2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion, chromatin silencing, DNA methylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Domain of unknown function XS (InterPro:IPR005380), Domain of unknown function XH (InterPro:IPR005379), Domain of unknown function, putative Zinc finger, XS/XH (InterPro:IPR005381); BEST Arabidopsis thaliana protein match is: XH/XS domain-containing protein (TAIR:AT3G12550.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR