1. Home
  2. Mutant Lines
  3. 15-3708-1

15-3708-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24134539 [Map]; Strand: w
      • AT5G59930.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 15-3708-1 - 3-prime edge
    GATGTACCGA GGAGCAGGTT GAAGAGAATA ATCGCGAAAG GGTAGTTGTA 
    CTGCTGATGT ATCCATGTAT TGATCGATGG AAGTGATCTT GCGTGTTTCT
    TTGGTGAGAT CACGAAGTCG AACCGGAAGA CAGCAATATA TTTATCTTCT
    TGTATATAAA TAAATAAAAA TATGAAAAAT GTATGTTATA TATGTTGCCT
    TCGCAAACCA AAAACAAATT GGGGTGTTTA TCTAATCCTA TATAGTATAC
    CGGAACATAT TGTCCGTTCC GTGCCATACA AGGTCCTCCT CTGTGTCTCA
    CATGTGAAGT TAGGAGGCTT TTTTCGCTAA CAGCTAACAT GCTTGAAGCT
  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24134646 [Map]; Strand: w
      • AT5G59930.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 15-3708-1 - 5-prime edge
    NGGCANANCN NAGCNNCCGA CNTGCAGCNT CGCCNNCCGG GCGCGGATNA 
    CCANGGGGGG NNGAAGACCA GGNCGTGCNC TATANAGANN CAAGGGAANG
    CCGGATNANN CANGAATATA NAANGAGCCN TATGATNCTA NNANATAANA
    TTCTAATTAC GATCNCATNT GANNAGGGAT GGTGGAGTNG TATNTGAGNT
    TNGNGTGGAG AAATANAGCC AGCGAAGNAC TTTTATAGNT GTNCCACATG
    TAAAATNAAG GTGGATTNGA CTTGTGGGAT GAACCCACCA NNGNAANCTA
    TGGAACATAC NATCNGCCAT GACCATGAAC TTGNNCTNNC NGAAGAAAAG
    ACNGGGAGAA NACCAAATGG AGAAGTNNGC AAGAATAGAA TNANGGGATC
    ATCNTATACA TGTCTNNGAT GCGAGNNGAA CTANNANGGN NGNTNNNNCN
    ATCGGNTCNN ACGAGGAAAA NCATNANNGG NAATNNTNAG NATACNAAAA
    TNTTCGACGN GCTNCGNNTG NCGNNNCNAA ANCACGGNNN NAGAANAAGN
    NGTNCTNNAT GANNGGNNAT NGAACGNANG NCATGANNNN AAANANNNGG
    ANAANCANGN NAGGNACNAG AGCGAACNAG GGNGNNTCNA ACCAACNNNA
    AACCAAGCAN ANGNCAANNN NAAANAACNG AACANTTNGT ATNNNAATNN
    TCNCNANACG ANAATNNATA NCACNGNNCG NAGNGCAGAN AAAANNAAC

AT5G59930.1

Model type
Protein coding
Short Description
Cysteine/Histidine-rich C1 domain family protein
Computational Description
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: intracellular signaling pathway; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein kinase C-like, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, ZZ-type (InterPro:IPR000433), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT5G59940.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR