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15-3708-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24134539 [Map]; Strand: w
      • AT5G59930.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 15-3708-1 - 3-prime edge 
    GATGTACCGA GGAGCAGGTT GAAGAGAATA ATCGCGAAAG GGTAGTTGTA 
    CTGCTGATGT ATCCATGTAT TGATCGATGG AAGTGATCTT GCGTGTTTCT 
    TTGGTGAGAT CACGAAGTCG AACCGGAAGA CAGCAATATA TTTATCTTCT 
    TGTATATAAA TAAATAAAAA TATGAAAAAT GTATGTTATA TATGTTGCCT 
    TCGCAAACCA AAAACAAATT GGGGTGTTTA TCTAATCCTA TATAGTATAC 
    CGGAACATAT TGTCCGTTCC GTGCCATACA AGGTCCTCCT CTGTGTCTCA 
    CATGTGAAGT TAGGAGGCTT TTTTCGCTAA CAGCTAACAT GCTTGAAGCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24134646 [Map]; Strand: w
      • AT5G59930.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 15-3708-1 - 5-prime edge 
    NGGCANANCN NAGCNNCCGA CNTGCAGCNT CGCCNNCCGG GCGCGGATNA 
    CCANGGGGGG NNGAAGACCA GGNCGTGCNC TATANAGANN CAAGGGAANG 
    CCGGATNANN CANGAATATA NAANGAGCCN TATGATNCTA NNANATAANA 
    TTCTAATTAC GATCNCATNT GANNAGGGAT GGTGGAGTNG TATNTGAGNT 
    TNGNGTGGAG AAATANAGCC AGCGAAGNAC TTTTATAGNT GTNCCACATG 
    TAAAATNAAG GTGGATTNGA CTTGTGGGAT GAACCCACCA NNGNAANCTA 
    TGGAACATAC NATCNGCCAT GACCATGAAC TTGNNCTNNC NGAAGAAAAG 
    ACNGGGAGAA NACCAAATGG AGAAGTNNGC AAGAATAGAA TNANGGGATC 
    ATCNTATACA TGTCTNNGAT GCGAGNNGAA CTANNANGGN NGNTNNNNCN 
    ATCGGNTCNN ACGAGGAAAA NCATNANNGG NAATNNTNAG NATACNAAAA 
    TNTTCGACGN GCTNCGNNTG NCGNNNCNAA ANCACGGNNN NAGAANAAGN 
    NGTNCTNNAT GANNGGNNAT NGAACGNANG NCATGANNNN AAANANNNGG 
    ANAANCANGN NAGGNACNAG AGCGAACNAG GGNGNNTCNA ACCAACNNNA 
    AACCAAGCAN ANGNCAANNN NAAANAACNG AACANTTNGT ATNNNAATNN 
    TCNCNANACG ANAATNNATA NCACNGNNCG NAGNGCAGAN AAAANNAAC

AT5G59930.1

Model type
Protein coding
Short Description
Cysteine/Histidine-rich C1 domain family protein
Computational Description
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: intracellular signaling pathway; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein kinase C-like, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, ZZ-type (InterPro:IPR000433), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT5G59940.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR