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15-3756-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30147105 [Map]; Strand: w
      • AT1G80140.1 - [+] show detail - Pectin lyase-like superfamily protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 15-3756-1 - 5-prime edge
    NGTNTCCTAA CNAACCATCT NTATGNGATA ATACATNNTG NANCCTATAA 
    CGTGTCACAG GAAGTTGCAT CTGCCTTGCA CCAACGGTAA GTTTGCTATT
    TACAAAAGGA AGTACTGTAG TATGTATATA ATAACTTGGA CGTCTCTATA
    ACTATAGATA TATTTCTCGC AGATGATGAC ATTTAGCAAC TGCGGAAATG
    TAACATTAAA GAGTTTGAGA TTTAGAAATA GTGCACAAAC ACATGTTCTT
    GTGATGGGAA GCCAAAATGT GTATATCGAT GATATCAAAA TAACATCACC
    GGAGGCTAGC CCTAACACCG ACGGTATTCA CATNACATNT TCCACCGCCG
    TTTCTATCAA TCATTCTGAC ATCGCCNCTG GNATATTNNC TTACCTAACC
    ATATAAAAGA TCAAACAAAA GNTTAATTTG CTATNCNATT CNCACAATTA
    ATTAAACAGG TGATGATTGT GTGTCNATCG GAGATCAAGT GAATAATNTG
    AATGTTACTT CTTATGACTN GCAGACCTGG TTCACGGTGT GAGGTGANTA
    CCNTNTCCTT ANCNACACTN NTAATCTNNT ATTTTTACTT CTTANCAAAC
    CGAGAACTNC TNNNAANNNT NGAGACAGCT TTGNCGNGTN TTANGGNNNA
    AGAGGAACNN NGGTTNNCNN GGNTATNCAA TACNNTNGNN NNNACNGTAA
    NCTTTNNTGN GNCANNACNC GGAACTCGAA NNAACACTTN NCCNNGNG
  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30146989 [Map]; Strand: w
      • AT1G80140.1 - [+] show detail - Pectin lyase-like superfamily protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 15-3756-1 - 3-prime edge
    AGGATACATT ATAACCCAAG AAAAATAAAA AGTTAAAAAA AAGGAAACTT 
    ACAGGGTCCG GGATGGTCTC TACAATGAAT ATCCCACCAT GATTTGCCTT
    GGCCGTCCAA CAAGCCGCGC CCTACGATTG CAAGTCCATC TACGTTGATC
    GAATATGAGC CATGGTATTA CCCCGTTCTC ACCATTTCCC CACTTCTGTG
    GATCACTCTG CGCTATCATC TCTCCATCGA TCTATATATA CATATATCAG
    CAAAAGTAAC CTTATAATTA ACTTGGAGGA GTAGGTTCAT ATTCGAGTAT
    TCATGTAATA TCAATCAAGT AAAGTGGTGG AGGGATTTAC AATGAAAAGG
    AGAGGTTTGG GTATGCAAGG ACCCGTGAAG TGAAGGGAGT TGAGGAGGAA
    CACCTTCCCT GCTGGTACGT TTACACTTCC CATTTTGGAG CTTCCCTTAC
    AAGCATCCTC CCACGCCTTT TGGAACGCCT TGTTTTTTTT NGCCCANNTA
    TNCCANGCAA AANTTTANTT TTTTTNATNT NAGGACTAAA CAATNNTGCN
    GNTGGCNCGT GATTTTTAAT ANATACNCCC CANTNCNTTN CAGATTNACN
    ANNNANAATT TCNTTCCTNA ACGGCNCCNT NTTTNATNCA NTGATNNNNT
    TNTNNCTTNA ACCCGGAAAN TCTTAAANAT NGAANAATNN CAATNAAANA
    CCAATCCTTA NNCNTNGNGN CAAAAAGAGG ATNAAATTTT TTCAAAATNA
    GGGTCAAGGG T

AT1G80140.1

Model type
Protein coding
Short Description
Pectin lyase-like superfamily protein
Computational Description
Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell, leaf; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Parallel beta-helix repeat (InterPro:IPR006626), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT1G70500.1); Has 3888 Blast hits to 3869 proteins in 461 species: Archae - 6; Bacteria - 1036; Metazoa - 13; Fungi - 1239; Plants - 1472; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).
Link
InterPro Scan - TAIR