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15-3756-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30147105 [Map]; Strand: w
      • AT1G80140.1 - [+] show detail - Pectin lyase-like superfamily protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 15-3756-1 - 5-prime edge 
    NGTNTCCTAA CNAACCATCT NTATGNGATA ATACATNNTG NANCCTATAA 
    CGTGTCACAG GAAGTTGCAT CTGCCTTGCA CCAACGGTAA GTTTGCTATT 
    TACAAAAGGA AGTACTGTAG TATGTATATA ATAACTTGGA CGTCTCTATA 
    ACTATAGATA TATTTCTCGC AGATGATGAC ATTTAGCAAC TGCGGAAATG 
    TAACATTAAA GAGTTTGAGA TTTAGAAATA GTGCACAAAC ACATGTTCTT 
    GTGATGGGAA GCCAAAATGT GTATATCGAT GATATCAAAA TAACATCACC 
    GGAGGCTAGC CCTAACACCG ACGGTATTCA CATNACATNT TCCACCGCCG 
    TTTCTATCAA TCATTCTGAC ATCGCCNCTG GNATATTNNC TTACCTAACC 
    ATATAAAAGA TCAAACAAAA GNTTAATTTG CTATNCNATT CNCACAATTA 
    ATTAAACAGG TGATGATTGT GTGTCNATCG GAGATCAAGT GAATAATNTG 
    AATGTTACTT CTTATGACTN GCAGACCTGG TTCACGGTGT GAGGTGANTA 
    CCNTNTCCTT ANCNACACTN NTAATCTNNT ATTTTTACTT CTTANCAAAC 
    CGAGAACTNC TNNNAANNNT NGAGACAGCT TTGNCGNGTN TTANGGNNNA 
    AGAGGAACNN NGGTTNNCNN GGNTATNCAA TACNNTNGNN NNNACNGTAA 
    NCTTTNNTGN GNCANNACNC GGAACTCGAA NNAACACTTN NCCNNGNG

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30146989 [Map]; Strand: w
      • AT1G80140.1 - [+] show detail - Pectin lyase-like superfamily protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 15-3756-1 - 3-prime edge 
    AGGATACATT ATAACCCAAG AAAAATAAAA AGTTAAAAAA AAGGAAACTT 
    ACAGGGTCCG GGATGGTCTC TACAATGAAT ATCCCACCAT GATTTGCCTT 
    GGCCGTCCAA CAAGCCGCGC CCTACGATTG CAAGTCCATC TACGTTGATC 
    GAATATGAGC CATGGTATTA CCCCGTTCTC ACCATTTCCC CACTTCTGTG 
    GATCACTCTG CGCTATCATC TCTCCATCGA TCTATATATA CATATATCAG 
    CAAAAGTAAC CTTATAATTA ACTTGGAGGA GTAGGTTCAT ATTCGAGTAT 
    TCATGTAATA TCAATCAAGT AAAGTGGTGG AGGGATTTAC AATGAAAAGG 
    AGAGGTTTGG GTATGCAAGG ACCCGTGAAG TGAAGGGAGT TGAGGAGGAA 
    CACCTTCCCT GCTGGTACGT TTACACTTCC CATTTTGGAG CTTCCCTTAC 
    AAGCATCCTC CCACGCCTTT TGGAACGCCT TGTTTTTTTT NGCCCANNTA 
    TNCCANGCAA AANTTTANTT TTTTTNATNT NAGGACTAAA CAATNNTGCN 
    GNTGGCNCGT GATTTTTAAT ANATACNCCC CANTNCNTTN CAGATTNACN 
    ANNNANAATT TCNTTCCTNA ACGGCNCCNT NTTTNATNCA NTGATNNNNT 
    TNTNNCTTNA ACCCGGAAAN TCTTAAANAT NGAANAATNN CAATNAAANA 
    CCAATCCTTA NNCNTNGNGN CAAAAAGAGG ATNAAATTTT TTCAAAATNA 
    GGGTCAAGGG T

AT1G80140.1

Model type
Protein coding
Short Description
Pectin lyase-like superfamily protein
Computational Description
Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell, leaf; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Parallel beta-helix repeat (InterPro:IPR006626), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT1G70500.1); Has 3888 Blast hits to 3869 proteins in 461 species: Archae - 6; Bacteria - 1036; Metazoa - 13; Fungi - 1239; Plants - 1472; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).
Link
InterPro Scan - TAIR