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15-3777-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Anatomical entity
/structure development stage
Phenotype
whole plant flowering stage (PO:0007016)
  • late (PATO:0000693)
    (Flowering & Growth::late flowering)

vascular leaf (PO:0009025)
  • dark green (PATO:0001249)
    (Leaves::dark green)
  • wrinkled (PATO:0001810)
    (Leaves::rough surface)

whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Flowering & Growth::dwarf/small)

seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed yield::sterile)

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7623938 [Map]; Strand: w
      • AT1G21700.1 - [+] show detail - SWITCH/sucrose nonfermenting 3C
        Distance: 0; Region: intron1 (CDS)
      • AT1G21710.1 - [+] show detail - 8-oxoguanine-DNA glycosylase 1
        Distance: -458; Region: promoter
    Flanking Genome Sequence: 15-3777-1 - 5-prime edge
    CNTGAAAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATCCA GATAAAGATG TGAAACAGCA ATTTACCTTC
    AGAAGCTGGC ATTTTTGTGG ATGAAGATAG AGAAATAGAG GTTTTGGGTT
    CTGTGGAATC GAAGCAAGAC CCTTAGTAAA AAGAATTGCT TTCTTTGTCT
    TCTCTCCTCC GAGTCGTTCT GATTTCCAGC TCTCGAGCTA AACACCAAAC
    CTTTTTCTCG CAATTTCTTT CACCATTTCC TTCATTAATC TCTATATATT
    AATTCATTCT CCACGACGAC CTAACCTTCT CGACAAACAA GAGGGTTCTG
    ATTTCGAAAT TCAAGCT
  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7623943 [Map]; Strand: w
      • AT1G21700.1 - [+] show detail - SWITCH/sucrose nonfermenting 3C
        Distance: 0; Region: intron1 (CDS)
      • AT1G21710.1 - [+] show detail - 8-oxoguanine-DNA glycosylase 1
        Distance: -453; Region: promoter
    Flanking Genome Sequence: 15-3777-1 - 3-prime edge
    ANTGAAAACG GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC 
    CCGTTTATCT CTCTCAAAAT CCAAATTTAA ATTGGGATTT GACTTACCCA
    CATAGATCGT AGTGATGGGT ATTTCGAGAA TT

AT1G21700.1

Model type
Protein coding
Short Description
SWITCH/sucrose nonfermenting 3C
Curator Summary
a member of the Arabidopsis SWI3 gene family. Protein physically interacts with ATSWI3B and ATSWI3A, the other two members of the SWI3 family. Homologous to yeast SWI3 & RSC8, components of the SWI/SNF and RSC chromatin remodeling complexes. Referred to as CHB3 in Zhou et al (2003).
Computational Description
SWITCH/sucrose nonfermenting 3C (SWI3C); FUNCTIONS IN: DNA binding; INVOLVED IN: chromatin remodeling; LOCATED IN: SWI/SNF complex, chromatin remodeling complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), SWIRM (InterPro:IPR007526), SANT, eukarya (InterPro:IPR017884); BEST Arabidopsis thaliana protein match is: DNA-binding family protein (TAIR:AT4G34430.3); Has 4703 Blast hits to 3623 proteins in 273 species: Archae - 0; Bacteria - 43; Metazoa - 1892; Fungi - 779; Plants - 380; Viruses - 2; Other Eukaryotes - 1607 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G21710.1

Model type
Protein coding
Short Description
8-oxoguanine-DNA glycosylase 1
Curator Summary
Encodes 8-oxoguanine-DNA glycosylase. DNA repair enzyme.
Computational Description
8-oxoguanine-DNA glycosylase 1 (OGG1); FUNCTIONS IN: oxidized purine base lesion DNA N-glycosylase activity; INVOLVED IN: DNA repair, base-excision repair; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), Helix-hairpin-helix DNA-binding motif, class 1 (InterPro:IPR003583), Transcription factor TFIID, C-terminal/DNA glycosylase, N-terminal (InterPro:IPR012294), 8-oxoguanine DNA glycosylase, N-terminal (InterPro:IPR012904), HhH-GPD domain (InterPro:IPR003265); Has 951 Blast hits to 936 proteins in 417 species: Archae - 106; Bacteria - 332; Metazoa - 176; Fungi - 163; Plants - 46; Viruses - 0; Other Eukaryotes - 128 (source: NCBI BLink).
Link
InterPro Scan - TAIR