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15-3785-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 507424 [Map]; Strand: w
      • AT1G02460.1 - [+] show detail - Pectin lyase-like superfamily protein
        Distance: -220; Region: promoter
    Flanking Genome Sequence: 15-3785-1 - 3-prime edge 
    CACAAAGGTG ACTTTTTTCT CCTCACAATA AAAAATAATA AAATATGCAA 
    TTTTACAGTA AGTCACAACC ATAGTAACAG TCATAATCAA TAAACCCCCA 
    AAAAACCCGG TAAGCT

AT1G02460.1

Model type
Protein coding
Short Description
Pectin lyase-like superfamily protein
Computational Description
Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; EXPRESSED IN: stem, root, stamen, seed; EXPRESSED DURING: 4 anthesis, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT4G01890.1); Has 5413 Blast hits to 5130 proteins in 651 species: Archae - 6; Bacteria - 1539; Metazoa - 261; Fungi - 1343; Plants - 1850; Viruses - 100; Other Eukaryotes - 314 (source: NCBI BLink).
Link
InterPro Scan - TAIR