Home
Mutant Lines
15-3810-1

15-3810-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence

Chromosome: 4; Position: 9504880 [Map]; Strand: w
- AT4G16890.1 - [+] show detail - disease resistance protein (TIR-NBS-LRR class), putative
  Distance: 0; Region: exon2 (CDS)

TATATGATCT TCAATTCCGA CTAAGTCGCC AAAATCATCC GATGGTGTCA 
TAGTTTTTCT CAAAACATCC TCGGCAAGCT CTTCAATCAT GGCTGCTTCA 
CTAGGCCTAA TAACAATAGT CAACNTGTTT CATTATAGTC TATTCATTGA 
AGTCACAATT GAAGTCTATT CATTGAAATA CCATTTCCGA AGATCATATC 
CAGCCATAAC TGCAACAGCT GCTAGAGCTT GCTTCCAACT TTGTTTCTCA 
TCCTCTGATT TAGCCTTGCA TGTTTCTTCA AAGACCTTTC CAAATTCACC 
GGTCTGTGTT TTAACTTCCG AAGCATCAAC GTGGAAGAAA ATCGGAATCA 
CCATTTGATT TAAATTCGTA TAACACTTGT GAATCTCCAC CAATTCATTC 
AGGCACCAGG TGGATGAAGC ATAGTTCTTA GAGAAGATAA CGATTGCTAT 
CCTCGATTCT TTTATTGCCG ATAAAAGCTC CGGGGCGATT GGGCGGCTCC 
TCTCGATCTC ATCATCTATG AATGTGATTG CTTTGCCCCT GAGCTCCTTG 
AGAAGATGGC TGAGGAATGA GTCACGGACA TCTTCTCCAC GAAAGCT

3 prime edge [+] show sequence

Chromosome: 4; Position: 9543585 [Map]; Strand: w
- AT4G16950.1 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
  Distance: 0; Region: exon2 (CDS)
- AT4G16950.2 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
  Distance: 0; Region: exon2 (CDS)

ATCATATAGA GGCAATAAAA TCAGTATTGT GCTTGGAATC CAAGGAAGCT 
AGAATGGTCG GGATTTGGGG ACAGTCAGGG ATTGGTAAGA GTACCATAGG 
AAGAGCTCTA TACAGTCAAC TCTCTAGCCA ATTCCCCCTT CGCGCNTTTC 
CTAACTTATA AAAGCAATAG TGGTAGTGAC GTCTCTGGCA TGAAGTTGAG 
TTGGCAAAAA GAACTTCTCT CGGAAATCTT AAATGAAAAA AGACATAAAG 
ATAGAGCATT TTGGTGTGGT GGAGCAAAGG TTGAAGCACA AGAAAGTTCT 
TATCCTTCTT GATGATGTGG ATAATCTAGA GTTTCTTAAG ACCTTGGTGG 
GAAAAGCTGA ATGGTTTGGA TCTGGAAGCA GAATAATTGT GATCACTCAA 
GATAGGCAAC TTCTCAAGGC TCATGAGATT GACCTTATAT ATGAGGTGGA 
GTTCCCATCT GAACATCTTG CTCTTACGAT GTTATGCCGA TCTGCTTTTG 
GGAAAGACTC TCCACCTGAT GATTTTAAGG AACTAGCATT TGAAGTTGCG 
AAGCT

AT4G16890.1

Model type: Protein coding
Short Description: disease resistance protein (TIR-NBS-LRR class), putative
Curator Summary: Encodes a Toll Interleukin1 receptor-nucleotide binding-Leu- rich repeat-type resistance gene (TIR-NB-LRR-type) involved in the salicylic acid-dependent defense response pathway. Mutant plants constitutively express pathogenesis-related (PR) genes and are pathogen resistant. Resistance signaling in snc1 requires EDS1, MOS3 and PAD4.
Computational Description: SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1 (SNC1); FUNCTIONS IN: nucleotide binding; INVOLVED IN: response to auxin stimulus, defense response to bacterium, incompatible interaction, defense response, systemic acquired resistance, salicylic acid mediated signaling pathway; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16920.1); Has 42615 Blast hits to 22768 proteins in 878 species: Archae - 40; Bacteria - 3631; Metazoa - 4485; Fungi - 289; Plants - 31985; Viruses - 14; Other Eukaryotes - 2171 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G16950.1

Model type: Protein coding
Short Description: Disease resistance protein (TIR-NBS-LRR class) family
Curator Summary: Contains a putative nucleotide binding site and leucine-rich repeats. Similar to the plant resistance genes N and L6, and to the toll and interleukin-1 receptors. Confers resistance to Peronospora parasitica.
Computational Description: RECOGNITION OF PERONOSPORA PARASITICA 5 (RPP5); FUNCTIONS IN: nucleotide binding; INVOLVED IN: defense response to fungus, incompatible interaction, defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16920.1); Has 33222 Blast hits to 18539 proteins in 791 species: Archae - 22; Bacteria - 2185; Metazoa - 2568; Fungi - 207; Plants - 26793; Viruses - 32; Other Eukaryotes - 1415 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G16950.2

Model type: Protein coding
Short Description: Disease resistance protein (TIR-NBS-LRR class) family
Curator Summary: Contains a putative nucleotide binding site and leucine-rich repeats. Similar to the plant resistance genes N and L6, and to the toll and interleukin-1 receptors. Confers resistance to Peronospora parasitica.
Computational Description: RECOGNITION OF PERONOSPORA PARASITICA 5 (RPP5); FUNCTIONS IN: nucleotide binding; INVOLVED IN: defense response to fungus, incompatible interaction, defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16920.1); Has 33205 Blast hits to 18535 proteins in 791 species: Archae - 22; Bacteria - 2185; Metazoa - 2566; Fungi - 207; Plants - 26778; Viruses - 32; Other Eukaryotes - 1415 (source: NCBI BLink).
Link: InterPro Scan - TAIR