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15-3903-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 6472377 [Map]; Strand: w
      • AT3G18777.1 - [+] show detail - pseudogene, similar to RING-H2 zinc finger protein, similar to putative RING ...
        Distance: 988; Region: intergenic
      • AT3G18779.1 - [+] show detail - unknown protein; LOCATED IN: endomembrane system; Has 30201 Blast hits to 173...
        Distance: 2165; Region: intergenic
    Flanking Genome Sequence: 15-3903-1 - 5-prime edge 
    GCTCTGAAGA TCACCTCTTC TTCCTTGGCG CCAACAATTT TCAGTACTCT 
    AAAGCGACTG GACCAGTAGG TGTTCCGGGT CACCTCGCTT TGGGCCTATT 
    AAAAAGCCCA TTATGGTCTG GACTGTCTTT TTTTTTNGGC AAAGGGTCNG 
    GACNGNNATG TTNATATTTN CCANATNAAA TNAAGTNAAA TTTTCCCAAA 
    TAAAAAAANC ATAATCATTN GTTTNGGGGA CTNACCATTN GTTTNANAAA 
    TCCCNAAATN GATTNATACN CAATCCTAAC CAGTTAAAAC CAGTTANCTG 
    CCGGGGNGCA ACTNTAAAGN CCATTCCNNA TCNANNTTNA TNNGGTTATA 
    GGCTNATANC CTAAGCTACN AGCCNGGGCC GTNAACNACC CNNGCCCNTA 
    TA

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 6472261 [Map]; Strand: w
      • AT3G18777.1 - [+] show detail - pseudogene, similar to RING-H2 zinc finger protein, similar to putative RING ...
        Distance: 872; Region: intergenic
      • AT3G18779.1 - [+] show detail - unknown protein; LOCATED IN: endomembrane system; Has 30201 Blast hits to 173...
        Distance: 2281; Region: intergenic
    Flanking Genome Sequence: 15-3903-1 - 3-prime edge 
    TTCAGAGCTG AGCAATTAGA TCTTCTATAT CAAGATTTGA GGTAGTATTT 
    ATATTTCAAA TTCCCAATTG CGCTCTACTA AAACTCTAAT TCATGCAGTT 
    TCGTTTGATT CTCGTATAAA TTTCTCAAAT CAATTTCACC TAATTTTCAC 
    NTGGGCNTTA GTTGATTAAG TCGAAACTTG GAACATTAAT TTAACCACAT 
    TGATCCTGCT TGTCTTTCTC GTTTAGTTTC TCGATTCTAG AATGATTTTT 
    GTGTTTGTTG ACACATCTAG GGGTTTTGAA CATGTAGAAT T

AT3G18777.1

Model type
Pseudogene
Computational Description
pseudogene, similar to RING-H2 zinc finger protein, similar to putative RING zinc finger protein GB:AAF16660 from (Arabidopsis thaliana); blastp match of 47% identity and 3.3e-31 P-value to GP|17016985|gb|AAL33552.1|AF436851_1|AF436851 RING-H2 zinc finger protein {Cucumis melo}
Link
InterPro Scan - TAIR

AT3G18779.1

Model type
Protein coding
Computational Description
unknown protein; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR