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15-3917-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Anatomical entity
/structure development stage		 Phenotype
vascular leaf (PO:0009025)
  • wrinkled (PATO:0001810)
    (Leaves::rough surface)

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 11800356 [Map]; Strand: w
      • AT1G32640.1 - [+] show detail - Basic helix-loop-helix (bHLH) DNA-binding family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 15-3917-1 - 5-prime edge 
    TTAGCCCGTT CACAACCCGA CCCGGATAAT TGATCTGACC CGGAAACCCA 
    AACCGCGTTA CCCGTTGCAA ACGCTTTACC AGCTAATCCC GCACCGCAAG 
    CGAAGCTCTG CGTCATCGAA ACCAAGAAAA ACCATTCCGT ATCCGTCACC 
    TCCTCATCAA CAGCGTCATC CGACGGAGCA ACACCACCGG AGATCAACGA 
    GTTAAGCTCT CTCAACACTT TTTTCCTGTA CTCCTGATCC GCCGGAGTAG 
    AAAACGGCGG CGAACTCGAT CTCCGTCTCG GGTTTGCTTT ATCTTCTTCA 
    CCTTTGTAAT AACCATCTCC CCATCCGAGC ACGGAGGCGC CGGAGAAATC 
    ATACGACGGT TGCCAGAATA TAGCGTAGGT CCAACCTTCG TGTGTTCCTT 
    CAATCAAAGC T

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 11800292 [Map]; Strand: w
      • AT1G32640.1 - [+] show detail - Basic helix-loop-helix (bHLH) DNA-binding family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 15-3917-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCG 
    TGCGGGCTAA GCAAGGAGGA GTGTTTGGGA TGCATACTAT TGCGTGTATT 
    CCTTCGGCGA ACGGAGTTGT GGAAGTCGGG TCAACGGAGC CGATCCGACA 
    GAGTTCGGAC CTTATTAACA AGGTTCGAAT T

AT1G32640.1

Model type
Protein coding
Short Description
Basic helix-loop-helix (bHLH) DNA-binding family protein
Curator Summary
Encodes a MYC-related transcriptional activator with a typical DNA binding domain of a basic helix-loop-helix leucine zipper motif. Binds to an extended G-Box promoter motif. Its transcription is induced by dehydration stress and ABA treatment. Negative regulator of blue light
Computational Description
MYC2; FUNCTIONS IN: DNA binding, transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 13 processes; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: Basic helix-loop-helix (bHLH) DNA-binding family protein (TAIR:AT4G17880.1); Has 4078 Blast hits to 3762 proteins in 672 species: Archae - 2; Bacteria - 2; Metazoa - 761; Fungi - 108; Plants - 3150; Viruses - 25; Other Eukaryotes - 30 (source: NCBI BLink).
Link
InterPro Scan - TAIR