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15-3937-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7624461 [Map]; Strand: c
      • AT1G21700.1 - [+] show detail - SWITCH/sucrose nonfermenting 3C
        Distance: -325; Region: promoter
      • AT1G21710.1 - [+] show detail - 8-oxoguanine-DNA glycosylase 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 15-3937-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT AGTCGACCGT CGAGGTCTCT TCATCGCCGT 
    TGCTCGTTAA CGGAACCACC ACACCAGTAT TAATGCGCGA CGGTCGACTA 
    ATGTATCAAT TTAAACCGGT TTAACCAATT TGAATTTTAA GAACCGAACT 
    AAATAATTGA TTCGGTTTTT CTCATTCAAA ATTGAAAAAT AAAACCGAAG 
    TAAAGTTGAC TTTAACCGAA GTTAAACCAA AATTTGGATT GGTCAACGAA 
    GCT

AT1G21700.1

Model type
Protein coding
Short Description
SWITCH/sucrose nonfermenting 3C
Curator Summary
a member of the Arabidopsis SWI3 gene family. Protein physically interacts with ATSWI3B and ATSWI3A, the other two members of the SWI3 family. Homologous to yeast SWI3 & RSC8, components of the SWI/SNF and RSC chromatin remodeling complexes. Referred to as CHB3 in Zhou et al (2003).
Computational Description
SWITCH/sucrose nonfermenting 3C (SWI3C); FUNCTIONS IN: DNA binding; INVOLVED IN: chromatin remodeling; LOCATED IN: SWI/SNF complex, chromatin remodeling complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), SWIRM (InterPro:IPR007526), SANT, eukarya (InterPro:IPR017884); BEST Arabidopsis thaliana protein match is: DNA-binding family protein (TAIR:AT4G34430.3); Has 4703 Blast hits to 3623 proteins in 273 species: Archae - 0; Bacteria - 43; Metazoa - 1892; Fungi - 779; Plants - 380; Viruses - 2; Other Eukaryotes - 1607 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G21710.1

Model type
Protein coding
Short Description
8-oxoguanine-DNA glycosylase 1
Curator Summary
Encodes 8-oxoguanine-DNA glycosylase. DNA repair enzyme.
Computational Description
8-oxoguanine-DNA glycosylase 1 (OGG1); FUNCTIONS IN: oxidized purine base lesion DNA N-glycosylase activity; INVOLVED IN: DNA repair, base-excision repair; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), Helix-hairpin-helix DNA-binding motif, class 1 (InterPro:IPR003583), Transcription factor TFIID, C-terminal/DNA glycosylase, N-terminal (InterPro:IPR012294), 8-oxoguanine DNA glycosylase, N-terminal (InterPro:IPR012904), HhH-GPD domain (InterPro:IPR003265); Has 951 Blast hits to 936 proteins in 417 species: Archae - 106; Bacteria - 332; Metazoa - 176; Fungi - 163; Plants - 46; Viruses - 0; Other Eukaryotes - 128 (source: NCBI BLink).
Link
InterPro Scan - TAIR