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Mutant Lines
15-3965-1

15-3965-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence

Chromosome: 5; Position: 1382627 [Map]; Strand: c
- AT5G04770.1 - [+] show detail - cationic amino acid transporter 6
  Distance: 208; Region: intergenic
- AT5G04780.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
  Distance: -1913; Region: intergenic

ATCTAACGTT TCCATTTATT AATGTTATCT ATCACATGTA TATTTCATAC 
GTGATCTTGC CTTATAGGTT TGACAAAGAT TTGATCTTTC AATCTCAAAA 
ACTTGTAACC TAATAGTTTG TACTATATTT AAAAATATTG TGTGTTGTGA 
ATTGTACACA ACGGTAAAAC AAAAATATCA TCAGTTTCTC TATTCTCTCA 
ACAGATTGAC TTGCATATGA CCGATTTCAT TTTGGTCGTT CGTTAAACCA 
AAATACATAT TCTTTTTTTT CCTAAAGTTG TATTTAATAT TTTCTCATTA 
ATATTTCAAA CCCCCTCATG TAGAAAAAAA ATTAGAGAGT TTAATTACAT 
TTTGGTTCAT GATGCTTTAN AAAACTAAAC TAAATAAATA CTTTTCACAC 
TTCAATTAGC TCTTTCATGA CTTGTCCATC TTTCACACCA AAANATCCAT 
TCGCTTCAGC ATCANAACTC GCATGAACGC CATAAAACAA ATACACGAGC 
ACGATCAAAC CGGANAANAA TCCAAACCGG ACGTAAGAGG GTGCGTCCAA 
CGAACCAAGC AAAAAAATGT TCAAGAATAT CGACACGCAC GGGGTCCACG 
GCNTGAACGG GACTCCCCAC AACTCAGGTT TCCTAGCCTG GGGAACCACN 
CNCTGAAAGC TCANCACGAT GGCTATAGCC ACCACCGCCT TGGCNCCGAG 
CATGAAAGCT NCCN

3 prime edge [+] show sequence

Chromosome: 5; Position: 1163577 [Map]; Strand: c
- AT5G04230.2 - [+] show detail - phenyl alanine ammonia-lyase 3
  Distance: 0; Region: exon3 (CDS)
- AT5G04230.1 - [+] show detail - phenyl alanine ammonia-lyase 3
  Distance: 0; Region: exon3 (CDS)

TTTNATCCGC TGTACCGGTT TGTGCGGATG AACTCGAGAC GAGGTTGCTA 
ACCGGAGAGG ATGTTCGGTC ACCGGGAGAG GATTTTGACA AAGTCTTCAG 
GGCTATATCT CAAGGAAAAC TCATAGATCC TCTGTTTGAA TGTCTGAAAG 
AGTGGAACGG TGCTCCGATT TCTATCTGCT AAAACGTTTC GTCAGATCTC 
CATATATCGA GAATAAACAC ACCATTCGAA AATATTTGGT TGTGTAGTAA 
TCGTCTTGCC TTCGCCTTTT CAATAATGTC CTGTTTTTTT TTTNGGTNNA 
ANCGTNCNGT TTNTTTNATA ATNNTGNCGG GGGGTNGGGG GGGTNCGGTT 
NNGGGNNAAN NTNGTAAAAN ANNTNTTNNA TNTTNTNNTT TANCGTTTNN 
CANTTCCCNA AAATTNNTNC NTNTTNNANA ATCTNCNNAN NCNNCTTTNC 
CCAAAAAAAA AAAAAAAAAA AAATTTTNNN NNCNNAAAAA AAAANTTTNN 
NNNAAAAATN NCCNGNAANN CCNNCCCNAN NNNNAAAAAN NNNAANCCCC 
NTTTTTTTTT NNNCNNAAAN CCCNAATNNN NTTNAAAAAA AANNGGGGGN 
NGGNTTTTTT TTTNCCCCCC CCCCNNNNAN TTTTTTTTTT NAAAANCCCC 
CNCNCCNTTT TNNAAAAAAA TNAAAANCCC CNTNNTGGGG GGGGGNNNAA 
AAAAAAAAAA AAAANNCCNG GGGGGGGGNN NNANNAAANN NNNGGGNGCC 
NACCCCCCCN AAAAAAANNN NCCCCCCCNN C

AT5G04230.1

Model type: Protein coding
Short Description: phenyl alanine ammonia-lyase 3
Curator Summary: Member of Phenylalanine ammonialyase (PAL) gene family. Differs significantly from PAL1 and PAL2 and other sequenced plant PAL genes. Arabidopsis has four PALs: AT2G37040 (PAL1), AT3G53260 (PAL2), AT5G04230 (PAL3) and AT3G10340 (PAL4).
Computational Description: phenyl alanine ammonia-lyase 3 (PAL3); FUNCTIONS IN: phenylalanine ammonia-lyase activity; INVOLVED IN: response to wounding, defense response; LOCATED IN: cytoplasm; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phenylalanine/histidine ammonia-lyase (InterPro:IPR001106), Phenylalanine/histidine ammonia-lyases, active site (InterPro:IPR022313), L-Aspartase-like (InterPro:IPR008948), Phenylalanine ammonia-lyase (InterPro:IPR005922); BEST Arabidopsis thaliana protein match is: phenylalanine ammonia-lyase 4 (TAIR:AT3G10340.1); Has 4848 Blast hits to 4828 proteins in 1399 species: Archae - 40; Bacteria - 2936; Metazoa - 80; Fungi - 127; Plants - 1170; Viruses - 0; Other Eukaryotes - 495 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G04230.2

Model type: Protein coding
Short Description: phenyl alanine ammonia-lyase 3
Curator Summary: Member of Phenylalanine ammonialyase (PAL) gene family. Differs significantly from PAL1 and PAL2 and other sequenced plant PAL genes. Arabidopsis has four PALs: AT2G37040 (PAL1), AT3G53260 (PAL2), AT5G04230 (PAL3) and AT3G10340 (PAL4).
Computational Description: phenyl alanine ammonia-lyase 3 (PAL3); FUNCTIONS IN: phenylalanine ammonia-lyase activity; INVOLVED IN: response to wounding, defense response; LOCATED IN: cytoplasm; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phenylalanine/histidine ammonia-lyase (InterPro:IPR001106), Phenylalanine/histidine ammonia-lyases, active site (InterPro:IPR022313), L-Aspartase-like (InterPro:IPR008948), Phenylalanine ammonia-lyase (InterPro:IPR005922); BEST Arabidopsis thaliana protein match is: phenylalanine ammonia-lyase 4 (TAIR:AT3G10340.1).
Link: InterPro Scan - TAIR

AT5G04770.1

Model type: Protein coding
Short Description: cationic amino acid transporter 6
Curator Summary: Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Does not mediate efficient uptake of basic amino acids in yeast or Xenopus systems but can transport neutral and acidic amino acid analogs. Expressed in sink tissues. Induced during infestation of roots by the plant parasitic root-knot nematode, Meloidogyne incognita. Localized in the plasma membrane.
Computational Description: cationic amino acid transporter 6 (CAT6); CONTAINS InterPro DOMAIN/s: Cationic amino acid transporter (InterPro:IPR015606), Amino acid/polyamine transporter I (InterPro:IPR002293), Amino acid permease domain (InterPro:IPR004841); BEST Arabidopsis thaliana protein match is: cationic amino acid transporter 7 (TAIR:AT3G10600.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G04780.1

Model type: Protein coding
Short Description: Pentatricopeptide repeat (PPR) superfamily protein
Computational Description: Pentatricopeptide repeat (PPR) superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G02750.1); Has 38256 Blast hits to 13510 proteins in 241 species: Archae - 0; Bacteria - 13; Metazoa - 59; Fungi - 56; Plants - 37619; Viruses - 0; Other Eukaryotes - 509 (source: NCBI BLink).
Link: InterPro Scan - TAIR