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15-4034-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30345424 [Map]; Strand: c
      • AT1G80740.1 - [+] show detail - chromomethylase 1
        Distance: 0; Region: intron12 (CDS)
    Flanking Genome Sequence: 15-4034-1 - 5-prime edge 
    AATTTAAGGA ACTCCATTTG AATACGTCCA ACTTGTAAAT CCTACATTTA 
    TAACAGATGA ATAAGCAATG CAGTTATAAC TTATAAGAGT CTATTAAATT 
    TAAATGTACA ACTGTCCACA CTTGCTTTGA ATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30345540 [Map]; Strand: c
      • AT1G80740.1 - [+] show detail - chromomethylase 1
        Distance: 0; Region: exon13 (CDS)
    Flanking Genome Sequence: 15-4034-1 - 3-prime edge 
    CTTAAATTGG ACAACGCTCT TACGCTGGCT GATGCTATTA GTGATCTGCC 
    ACCGGTGTGT ATCTAAACTT CAGAACTGCC ATTGATGATT ATGTTACAAT 
    ATATCTGTCT GATCACTGCT CTCTTAGTGC TTGCAGGTGA CAAATTATGT 
    GGCAAATGAT GTAATGGATT ATAATGATGC TGCTCCTAAG ACAGAGTTTG 
    AGAACTTTAT TAGCCTCAAA AGATCTGGTG AGCATTTTAA ACTCGTAAAT 
    TTGGTAGGTA CCACTAATCC AATACTAACG TATCTTTCTT GTTTCAGAGA 
    CACTTTTACC CGCATTTGGT GGAGATCCGA CACGCAGGTT GTTTGATCAC 
    CAACCCCTCG TATTAGGAGA TGATGACTTG GAAAGAGTTT CCTACATACC 
    AAAACAGAAG GTGCGACATT TTTAAAGTAC TTGCTTCAAG CATTCAATGT 
    ATAATCATTT CTTGTTCATG TCATTGTATT CTTATTGTTA CAGGGGGCAA 
    ACTATCGCGA CATGCCTGGT GTTTTAGTTC ACAACAACAA AGCGGAAATT 
    AATCCTAGGT TTCGAGCAAA GTTGAAATCT GGAAAAAATG TGGTATAAAA 
    TAAACCACTC NCACCTTATC ATTTTTCTGC TCTAGTTTCT TTTTGCACCT 
    TCTATATNAC ATGTNTTTTG GTTTTCACAG GTCCCCTGCT TATGCAATTT 
    NTTCNTAAAG GAAAATCAAA AAGGGAGTTT CTCCANCTNA TTN

AT1G80740.1

Model type
Protein coding
Short Description
chromomethylase 1
Curator Summary
ecotype Kl-0 chromomethylase (CMT1). A plant line expressing an RNAi construct directed against DMT4 has reduced agrobacterium-mediated tumor formation.
Computational Description
chromomethylase 1 (CMT1); FUNCTIONS IN: chromatin binding, DNA binding; INVOLVED IN: DNA mediated transformation, DNA methylation; LOCATED IN: chromatin, nucleus; CONTAINS InterPro DOMAIN/s: Chromo domain subgroup (InterPro:IPR017984), DNA methylase, C-5 cytosine-specific (InterPro:IPR001525), Chromo domain-like (InterPro:IPR016197), Bromo adjacent homology (BAH) domain (InterPro:IPR001025), Chromo domain (InterPro:IPR000953); BEST Arabidopsis thaliana protein match is: chromomethylase 3 (TAIR:AT1G69770.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR