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15-4038-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2341379 [Map]; Strand: c
      • AT3G07340.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: 0; Region: exon7 (CDS)
    Flanking Genome Sequence: 15-4038-1 - 5-prime edge 
    CTNGGATAAA ACTAACAAAA TCGGTTATAC GATAACGGTC GGTACGGGAT 
    TTTCCCATCC TACTTTCATC CCGGATTATT CATATGGGTT TTGCGCAAAA 
    CCGTCTCCAA GAATTGAACC AAGGTAAGAA TATTTAAATC ATATTTTTTC 
    TTTCCATTTC ATTATATAGG CAGGACCGTT TAGATATGAT ATGTATAAAT 
    TGTACTATTA TATATGCAGG TTCATCAAAC CAAGTACCAT CGCACATGAA 
    AGCTGAACTT TGATCAACCA CTATATGCAT TTTTACAAAA ATATTGGCGT 
    TTTAAAGGTC TCGAGGATAG AAAGTAAGAA AAGGATTGAT GGGTGTACAT 
    AACAAGAAAT TTGAATTGGA CCACACCATA TGCGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 3419555 [Map]; Strand: c
      • AT2G07717.1 - [+] show detail - pseudogene, similar to NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3). (...
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 15-4038-1 - 3-prime edge 
    TGAATAATGC TATGTAAATC ATCTTCGGAA AATGTTGAAT ACTAAAAACA 
    AAACCAAAAA GGGTTAAGAC CGCTTCAAAT TGAAGAGAAA AAGAAAAGAA 
    AAGTGATAGA AGAATGTTTT AGAAAAGGAA ACCTGAGAAA TAGAGTCAGT 
    GATTTCCTGC TGAGATCCTA AGTCTCCAAG TGGGCCCTTA ACAAGCCCAT 
    TTATCTTTAG ATTTTGAAGA CGGGCGTTGC GTTCGGTTCG AAAGGTATGG 
    TTTTCAGTAT GTCTCCAGAT AGGGCGCCCC ACTAGTCCGG CTAGCTAGTG 
    AGCGGTTCTT TCGGGCGAGA AGCAGGCCGG GCCCTACGGG CGGGGGCATC 
    TCCCGCAACG AAAGCTGCAT AGTTCGCCAC CACCCGAAAA GTAAAAGATT 
    AGAGAGTCCA GACTAAAAAT ACATGCATAG ATAGTGATCT AATGACAAGG 
    GCCCCACATG ATTCAAATGA GCAAGTGTTG GTAAGTGAGA AATGAAGCT

AT2G07717.1

Model type
Pseudogene
Computational Description
pseudogene, similar to NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3). (Field mustard), blastp match of 99% identity and 2.0e-226 P-value to SP|Q04050|NU4M_BRACM NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3). (Field mustard) {Brassica campestris}
Link
InterPro Scan - TAIR

AT3G07340.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT5G48560.1); Has 2639 Blast hits to 2308 proteins in 133 species: Archae - 0; Bacteria - 4; Metazoa - 62; Fungi - 52; Plants - 2177; Viruses - 0; Other Eukaryotes - 344 (source: NCBI BLink).
Link
InterPro Scan - TAIR