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15-4119-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 10924659 [Map]; Strand: c
      • AT4G20230.1 - [+] show detail - Terpenoid cyclases/Protein prenyltransferases superfamily protein
        Distance: 0; Region: exon6 (CDS)
    Flanking Genome Sequence: 15-4119-1 - 5-prime edge 
    GTACTAANGA AGCTCNNGAG TGGCNTAANA TCNANGCCAA AACTCGNCCA 
    NTNTTNATGT ACTAAAGGNC AGTCTTATGA ATGATATANN CGGTTTTGAG 
    GTAAAAATGC TCAAATCATT TCTTCANATN AAGNGTATGT CCTACTTTCT 
    TGTTCCATCT TACCAACTTA TTACACATAT GTAGATTAGG ATGACATGAG 
    TAGAGGATAT GTCCTNAATG CTGTCAATNG NTATANGAAN CAATATGGAG 
    TNACTGAAAA GGAAGCTTTT ANNGAGCTNG GTAAAATGGT NGTCAATACA 
    CATAANACAT TAAATGAGGA GTTC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 10924727 [Map]; Strand: c
      • AT4G20230.1 - [+] show detail - Terpenoid cyclases/Protein prenyltransferases superfamily protein
        Distance: 0; Region: exon6 (CDS)
    Flanking Genome Sequence: 15-4119-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCT 
    TAGTACCCGT CTTTCCCATA GACATTAAAA TATATGCAAC GGTCACACAT 
    GCGGTGATTT CCATCTGTCC AACTTCCATG TACTTCTCAA AGCTAGGTAC 
    GTGAGACACT TGTGCCCATT TTGCCAACTC AACGTTAGCN TTTCGAAGAT 
    GCCTGGAACT GTGCATGCAC AAAAGTATTG AGCCGTTACG GCAAGAAAAT 
    GTTGTTTTTC AAAAACATTT TGAAATAATG AAGTAGCCAT GACCTTTTAT 
    TTTATAATAT ATTATTAACC CATAAAAATC ATTTCAAAGC CATGAGACAA 
    TATACATTAC CCTTCATTAA TATATATATA TATATATAGT ATATACAGTA 
    TANATAATTN TGTCCTCGTC TTAACAATAC TCAAAAACAA GAGTGGGGGG 
    GGNNACCTCT TCAANTGTGT ATNTCACACT GNNAGATCAN CAGCNN

AT4G20230.1

Model type
Protein coding
Short Description
Terpenoid cyclases/Protein prenyltransferases superfamily protein
Computational Description
Terpenoid cyclases/Protein prenyltransferases superfamily protein; FUNCTIONS IN: lyase activity, magnesium ion binding; INVOLVED IN: metabolic process; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: Terpenoid cyclases/Protein prenyltransferases superfamily protein (TAIR:AT4G20200.1); Has 1640 Blast hits to 1613 proteins in 178 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 3; Plants - 1633; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link
InterPro Scan - TAIR