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15-4162-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24873499 [Map]; Strand: c
      • AT5G61950.1 - [+] show detail - Ubiquitin carboxyl-terminal hydrolase-related protein
        Distance: -67; Region: promoter
    Flanking Genome Sequence: 15-4162-1 - 5-prime edge 
    GCCATAGTAA CGATTCTTCA CGATGATTCT TGCTCTCGAA GGTTTTGTTT 
    TGTGGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24873615 [Map]; Strand: c
      • AT5G61950.1 - [+] show detail - Ubiquitin carboxyl-terminal hydrolase-related protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 15-4162-1 - 3-prime edge 
    ACTATGGCGT CTTCTTTCAA GAAGGATGTT ATGGCGGAAA GACTCTACAA 
    AGACGCTGAA GATCTCATCG CTAAAGGAAA TCACATCAAG GCCTTGGAGA 
    TACTTGAAGA TTTGATTTCA ATCCATTGGA ATGCCAATGA CGCATGGCTT 
    CTTCATATCG AACAAGGTAA TGTTTTCGTA GACCTAGCTG AAAAAGCAGA 
    GGACCGTGAC ATGGAAGTCG CATACTTGTT GGGTTGTGTT GCTTGCTTTT 
    CGCAACATGT GACGGTATTT GAACTTTGTG CACAATCACT CTTCATGTTG 
    GGCAGAAACC TTGCGTCTGT GTCACATTAC AAGAAATGCT TGAAGAAAGC 
    AAGAGAGGCT TTATCTGATA GTAACTCTAA GAAACTGAGT TCTTCTACTC 
    CAGTGGCTTT CCGAGCCATA GTATCCCGAA AGAAGAAAGA CCTCGAGGGT 
    TTTATCGAAG ATGCAGAGTC CATGATCGCT GCTTCCAAGA CTTCTCCTTT 
    ACAAAAACCT GAGCCAAAAG TTCGGGACCC AGAGAAAACT CCAGAGCCGT 
    CTAAGGATGA TTTTCAGCGG TTTAGGTCCT ATTGGGTGGG ATTGGATGTT 
    AAGATCAAAA GGGACTTTCT GAAAGTAAGC ATTGCAAAGC T

AT5G61950.1

Model type
Protein coding
Short Description
Ubiquitin carboxyl-terminal hydrolase-related protein
Computational Description
Ubiquitin carboxyl-terminal hydrolase-related protein; FUNCTIONS IN: ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF627 (InterPro:IPR006866), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), Protein of unknown function DUF629 (InterPro:IPR006865); BEST Arabidopsis thaliana protein match is: Ubiquitin carboxyl-terminal hydrolase-related protein (TAIR:AT5G61940.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR