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15-4202-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 9568876 [Map]; Strand: w
      • AT1G27540.1 - [+] show detail - Protein of unknown function (DUF295)
        Distance: -970; Region: promoter
      • AT1G27540.2 - [+] show detail - Protein of unknown function (DUF295)
        Distance: -988; Region: promoter
      • AT1G27550.1 - [+] show detail - F-box family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 15-4202-1 - 5-prime edge 
    GNGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCACT CGCCTACCCA CAAACGGCCT CTCAGATCCT 
    CGGCAGTATG AGGAGCCCCA CGCGATAAAT CGCTGATTAA TATATCCCTG 
    ACTTTATCCT CTCCTACTCG CTCAATCTTT AAAAGGCTAC CTTTCAATGA 
    TTCTAGTGGT GGAAGATCGA TCCTCTCCTC GCTAAAGACA TCTATAATAT 
    AGAGTTTCAT TCGAGAATCT ACCACCAGAA ACTACTTACC TGAGCTTCCC 
    AGGAATCGAT ACCTCATACC TCCAAAGTCG AAAGGTCACT ATTCGTCTCG 
    TAAACCCTAT CATCGTTTGG GTTGGACACA CTACTACGAT AACCATCCTT 
    TTCTGCATAC ATCATCAGCA ATGGAGATCC GGCTTCTTGT CGCTGAATCA 
    AAGTCGAACG CATGGCCTTT GCAGACTCAG GATTCTGACA ACTCCATCGT 
    TGTTTGAACG TACTAGATCT CTGCATTTTC AGGTCGTCTT TTGATTAATT 
    GAGAAAGCGT TAAGTTGCAC ATACTGTTAT ATATACAACC AAGCCCAATA 
    ACAGCCAGAG AAAAATATTC TGTAACGGAT CTATGACCCA ATATAACATC 
    ATCGTGGATC ATTTCATTTG GTTGTTATTT AACTTATATT CGTGGAAACC 
    TTTAGCGTGT GAAACTGATT TCAAACTTTT TTAGATTTTG ATAAACGTTT 
    ATGTGTGAAA CTATCTTCAT AAAGATTAAA T

AT1G27540.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF295)
Computational Description
Protein of unknown function (DUF295); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF295) (TAIR:AT1G27580.1); Has 275 Blast hits to 268 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 275; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G27540.2

Model type
Protein coding
Short Description
Protein of unknown function (DUF295)
Computational Description
Protein of unknown function (DUF295); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF295) (TAIR:AT1G27580.1); Has 278 Blast hits to 271 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 278; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G27550.1

Model type
Protein coding
Short Description
F-box family protein
Computational Description
F-box family protein; BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF295) (TAIR:AT1G27580.1); Has 105 Blast hits to 103 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 105; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR