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15-4229-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 40779 [Map]; Strand: c
      • AT4G00110.1 - [+] show detail - UDP-D-glucuronate 4-epimerase 3
        Distance: -590; Region: promoter
    Flanking Genome Sequence: 15-4229-1 - 5-prime edge
    GNGATAAACN ACAAAATCGG TTATACGATA ACGGTCGGTA CGGGATTTAC 
    CCGGACTCAC TCACTAGTCA CTCACTAGTC ACTATAAATC AATATCGTTA
    TGTTTTTATC TTACAATAAG TGAATTTGAA GAATAAAATA GAGCTTTGAT
    GGATATTACT ATTATATATG CGGTCTAGTA GATGCNGTGT TGTTATTATA
    TTATTCCTTG AAGATTACTC TTTGCTTTTT TGTACCCCAT GGATAAATGT
    GCCTTGGTAT TAAGTTGCAA ATTTGATTTA ATTAATCCCT AAACATGTTA
    CTAGTTAGAG TTTGCACGTG ACGATCTTGG GCAGCACCTA AACATGTATT
    TGTGTGCGTA ATTTTGTAAT AAGTAAGTGC ATCGAGTTTG ATGAATCAGT
    ATTTGAATGA TAATTCGATG ACAGTACATT TGTTGCCATA AGAACCCTAA
    AGTAAGATCC ATAAGGATGA TGAAAGCT
  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 334463 [Map]; Strand: w
      • AT4G00760.1 - [+] show detail - pseudo-response regulator 8
        Distance: -986; Region: promoter
      • AT4G00780.1 - [+] show detail - TRAF-like family protein
        Distance: -269; Region: promoter
    Flanking Genome Sequence: 15-4229-1 - 3-prime edge
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCG 
    GAAATCTACT TTAACATTTT TTCTTTAAAC TTGACCCGGA GACCCAAAAC
    CCGTCTAACT TCAGAGCTGG TGTGAGTCTT CAAGTCATAT GGGTCCTGAG
    GTCTCTCCCC AAAAGTTAAG TATCTTATCT ACTAATCTCT CACTTGTTCT
    CTGAGTCATT CCGGAGGAAA TTCGTATCTA CTATACATTT AGTACCGAAT
    GGATGTATAT TCAGTATTGG ATAGTTAAAC TTGTTCCTTA AGAAAAAAAG
    AAATCGAGTT CATGGACTGA GATTTGCAAA CGAGGTCTTA TCATATCTTC
    TTGTAAAATA CCCGATCGGG TTCTGTTCTC AAATAATTTC AGGTATCAGG
    TATTACATGA ACCGAAATTG ATATCCGTGA GTATTTTTTA TTACCCGAAC
    ATATATATAC ATATGAGGAC ATATATACTG ATAACTTGAG TTTGTGAATT
    GTTTAATGAT TGGATTATGG AACAAGTTAA AAAAAAGGTT TACTTCTTGT
    TTTTTATTAT TGTCATAAAT GAAAACTTCT TATAATTTTA TGGATAGTTT
    TATATATGTT TGGGTATATC TGGACAAGGT TTGGGTAAAT AATATTGAAA
    CCCAAAATAN TTTTGGTTAT TTATTGGGTT CTTCACCTAT ACCCGAAAAG
    AACCTATAGC TTAAATAATA CGTATAATCN ACCCAGTCTT AACTTNTAAA
    CCGACCCCGA AAGACTCGAT CCAACCCGAC CCGATNCCCA AT

AT4G00110.1

Model type
Protein coding
Short Description
UDP-D-glucuronate 4-epimerase 3
Curator Summary
Encodes a putative membrane-anchored UDP-D-glucuronate 4-epimerase.
Computational Description
UDP-D-glucuronate 4-epimerase 3 (GAE3); FUNCTIONS IN: UDP-glucuronate 4-epimerase activity, catalytic activity; INVOLVED IN: cellular metabolic process, carbohydrate metabolic process, nucleotide-sugar metabolic process, metabolic process; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040), Nucleotide sugar epimerase (InterPro:IPR008089); BEST Arabidopsis thaliana protein match is: UDP-D-glucuronate 4-epimerase 2 (TAIR:AT1G02000.1); Has 43399 Blast hits to 43389 proteins in 2971 species: Archae - 792; Bacteria - 26013; Metazoa - 773; Fungi - 412; Plants - 1214; Viruses - 37; Other Eukaryotes - 14158 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00760.1

Model type
Protein coding
Short Description
pseudo-response regulator 8
Curator Summary
Encodes a response-regulator like protein.
Computational Description
pseudo-response regulator 8 (APRR8); FUNCTIONS IN: two-component response regulator activity, transcription regulator activity; INVOLVED IN: regulation of transcription, DNA-dependent, two-component signal transduction system (phosphorelay); LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver domain (InterPro:IPR001789); BEST Arabidopsis thaliana protein match is: response regulator 2 (TAIR:AT4G16110.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00780.1

Model type
Protein coding
Short Description
TRAF-like family protein
Computational Description
TRAF-like family protein; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT4G01390.1); Has 760 Blast hits to 681 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 739; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
Link
InterPro Scan - TAIR