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15-4229-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 40779 [Map]; Strand: c
      • AT4G00110.1 - [+] show detail - UDP-D-glucuronate 4-epimerase 3
        Distance: -590; Region: promoter
    Flanking Genome Sequence: 15-4229-1 - 5-prime edge 
    GNGATAAACN ACAAAATCGG TTATACGATA ACGGTCGGTA CGGGATTTAC 
    CCGGACTCAC TCACTAGTCA CTCACTAGTC ACTATAAATC AATATCGTTA 
    TGTTTTTATC TTACAATAAG TGAATTTGAA GAATAAAATA GAGCTTTGAT 
    GGATATTACT ATTATATATG CGGTCTAGTA GATGCNGTGT TGTTATTATA 
    TTATTCCTTG AAGATTACTC TTTGCTTTTT TGTACCCCAT GGATAAATGT 
    GCCTTGGTAT TAAGTTGCAA ATTTGATTTA ATTAATCCCT AAACATGTTA 
    CTAGTTAGAG TTTGCACGTG ACGATCTTGG GCAGCACCTA AACATGTATT 
    TGTGTGCGTA ATTTTGTAAT AAGTAAGTGC ATCGAGTTTG ATGAATCAGT 
    ATTTGAATGA TAATTCGATG ACAGTACATT TGTTGCCATA AGAACCCTAA 
    AGTAAGATCC ATAAGGATGA TGAAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 334463 [Map]; Strand: w
      • AT4G00760.1 - [+] show detail - pseudo-response regulator 8
        Distance: -986; Region: promoter
      • AT4G00780.1 - [+] show detail - TRAF-like family protein
        Distance: -269; Region: promoter
    Flanking Genome Sequence: 15-4229-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCG 
    GAAATCTACT TTAACATTTT TTCTTTAAAC TTGACCCGGA GACCCAAAAC 
    CCGTCTAACT TCAGAGCTGG TGTGAGTCTT CAAGTCATAT GGGTCCTGAG 
    GTCTCTCCCC AAAAGTTAAG TATCTTATCT ACTAATCTCT CACTTGTTCT 
    CTGAGTCATT CCGGAGGAAA TTCGTATCTA CTATACATTT AGTACCGAAT 
    GGATGTATAT TCAGTATTGG ATAGTTAAAC TTGTTCCTTA AGAAAAAAAG 
    AAATCGAGTT CATGGACTGA GATTTGCAAA CGAGGTCTTA TCATATCTTC 
    TTGTAAAATA CCCGATCGGG TTCTGTTCTC AAATAATTTC AGGTATCAGG 
    TATTACATGA ACCGAAATTG ATATCCGTGA GTATTTTTTA TTACCCGAAC 
    ATATATATAC ATATGAGGAC ATATATACTG ATAACTTGAG TTTGTGAATT 
    GTTTAATGAT TGGATTATGG AACAAGTTAA AAAAAAGGTT TACTTCTTGT 
    TTTTTATTAT TGTCATAAAT GAAAACTTCT TATAATTTTA TGGATAGTTT 
    TATATATGTT TGGGTATATC TGGACAAGGT TTGGGTAAAT AATATTGAAA 
    CCCAAAATAN TTTTGGTTAT TTATTGGGTT CTTCACCTAT ACCCGAAAAG 
    AACCTATAGC TTAAATAATA CGTATAATCN ACCCAGTCTT AACTTNTAAA 
    CCGACCCCGA AAGACTCGAT CCAACCCGAC CCGATNCCCA AT

AT4G00110.1

Model type
Protein coding
Short Description
UDP-D-glucuronate 4-epimerase 3
Curator Summary
Encodes a putative membrane-anchored UDP-D-glucuronate 4-epimerase.
Computational Description
UDP-D-glucuronate 4-epimerase 3 (GAE3); FUNCTIONS IN: UDP-glucuronate 4-epimerase activity, catalytic activity; INVOLVED IN: cellular metabolic process, carbohydrate metabolic process, nucleotide-sugar metabolic process, metabolic process; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040), Nucleotide sugar epimerase (InterPro:IPR008089); BEST Arabidopsis thaliana protein match is: UDP-D-glucuronate 4-epimerase 2 (TAIR:AT1G02000.1); Has 43399 Blast hits to 43389 proteins in 2971 species: Archae - 792; Bacteria - 26013; Metazoa - 773; Fungi - 412; Plants - 1214; Viruses - 37; Other Eukaryotes - 14158 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00760.1

Model type
Protein coding
Short Description
pseudo-response regulator 8
Curator Summary
Encodes a response-regulator like protein.
Computational Description
pseudo-response regulator 8 (APRR8); FUNCTIONS IN: two-component response regulator activity, transcription regulator activity; INVOLVED IN: regulation of transcription, DNA-dependent, two-component signal transduction system (phosphorelay); LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver domain (InterPro:IPR001789); BEST Arabidopsis thaliana protein match is: response regulator 2 (TAIR:AT4G16110.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00780.1

Model type
Protein coding
Short Description
TRAF-like family protein
Computational Description
TRAF-like family protein; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT4G01390.1); Has 760 Blast hits to 681 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 739; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
Link
InterPro Scan - TAIR