Home
Mutant Lines
15-4287-1

15-4287-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 1; Position: 29572968 [Map]; Strand: w
- AT1G78610.1 - [+] show detail - mechanosensitive channel of small conductance-like 6
  Distance: -842; Region: promoter
- AT1G78620.1 - [+] show detail - Protein of unknown function DUF92, transmembrane
  Distance: 0; Region: exon5 (3UTR)
- AT1G78620.2 - [+] show detail - Protein of unknown function DUF92, transmembrane
  Distance: 0; Region: exon5 (3UTR)

GACAGTAGTA AACCCATGTT AGAGAATTTA ACCAAAAAAG TGAAAAAACA 
TTGAAAAAAG TAAGAAAAAG GGCAAGCAAG AGTCTTCTTC AGGCGCGCCG 
TGGCGGACAT TTGACTTTAA GAAAGAAAAA GCGAGATTTG CGCNTGCGGC 
GGTGTAAAAA TCAGTCGTAA AATACACGCG TTTGAGGAGC GCGTGTGAAT 
TTTGACACTT GTCAGCTGTG TGTTAGACAG ATGTTGCGGC CCATGGGCCA 
TTGTCGTATC TTATTGCGGA CCACAGGTTC GTAGAAGCAA CGCATTGTAT 
AATTTTTCTT CATGTTTCAT AAGTCTAAAA GTAAACAAGC CTGTTAAGTC 
TCGCTGTCTT GTTTAACAGC TAGGCCGATG GATGCATTTT TCTCTAGAGG 
CTTCTAAATT AAAATTGGCC ACCAGAAACA CTATCTTATG CAACGTCGAG 
AATATTGCTA AAGATGACAG GAACAAGACA TAATAATGAC AAAAAAGAAG 
AATGTATTCG AGAAAATCAC GACTCTTCGA CGACTTCTTT CTCAACCAAT 
TCTTGGTACT TTGTTGTTGC CTTTTCTTCA AACTTTTTTC TTACATTTTC 
ATCACTACTT TCTCTATTTG CTACATAACT TTTTTTACAT GTTCTTNATT 
TTATGATGTC GCAATANAAT TTGGACTTCA TGTGAAGGAA ATAGAAGAAA 
TCACGTGAAT GGATCACCAN CCC

3 prime edge [+] show sequence

Chromosome: 1; Position: 29572852 [Map]; Strand: w
- AT1G78610.1 - [+] show detail - mechanosensitive channel of small conductance-like 6
  Distance: -726; Region: promoter

CTACTGTCTC CATAATAGTA GTAAGTTTGT AACTTTCTTA TTTCTGGAAC 
TGATCTAGTT CTAAAATATG CTTAATTCTT TATTAAGTTC TAAAAGAACT 
ACTTTAAAAA TTAATAACCT ATTATTAATT ACGACAACAT CTAACTAAGC 
CATTAAATAC AATATTCATC GTTTTGCGTG AGTCCTTCAT ACATGTGACG 
AATGTCCCTT CCCCACAAAG GCACAAACCT AACCTAATAA ACAATACCAA 
AAATGGAATA ATTTGATTTT TTTTTGAAAT ACTATATGCT AGCGTAGAAT 
CAAACAAAAT ATGTAAAACG ATATCCTTAA AACAAAATGT ATACTAAACA 
AATATTAGTT TGCCAAAGTT TGACGAAATA ATAAAAACCT AAATGGTTCG 
CCGNGAGTAA GTTCCCATCT TCTTCTCGAA CTTTGCCAAA GTTTGGTATT 
GAAAAAATAA TAATATTAAG ACACAGAGAG AGAGAGGGAG AAGAGGATCT 
CTGTGTGTCG NCCAAATTTC AAAGNGATGA TGTTGTAGCT GTGTGGTAGC 
GATNGGCTTA CACGCGTNAT ACTTTAATTA GATAATTTTA TTTCCTTATT 
ACTTACCCTC TCTTTTCTCA CAAAGAGTCA TCACCAGCTC TGATCAAATA 
AAAGCGGTTT TCTCTTCTTC TNGCTTTCAC AGTTNCCCAA AAGNGGGGAN 
AAANCTTCTT TTTTTNNGCT CCCTTCNAAA CNGGGGG

AT1G78610.1

Model type: Protein coding
Short Description: mechanosensitive channel of small conductance-like 6
Computational Description: mechanosensitive channel of small conductance-like 6 (MSL6); INVOLVED IN: transmembrane transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Membrane protein, At2g17000, predicted (InterPro:IPR016688), Mechanosensitive ion channel MscS (InterPro:IPR006685), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: mechanosensitive channel of small conductance-like 4 (TAIR:AT1G53470.1); Has 3617 Blast hits to 3602 proteins in 1077 species: Archae - 172; Bacteria - 2574; Metazoa - 1; Fungi - 205; Plants - 217; Viruses - 0; Other Eukaryotes - 448 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G78620.1

Model type: Protein coding
Short Description: Protein of unknown function DUF92, transmembrane
Computational Description: Protein of unknown function DUF92, transmembrane; LOCATED IN: chloroplast, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF92, transmembrane (InterPro:IPR002794); Has 865 Blast hits to 865 proteins in 301 species: Archae - 133; Bacteria - 238; Metazoa - 78; Fungi - 68; Plants - 85; Viruses - 0; Other Eukaryotes - 263 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G78620.2

Model type: Protein coding
Short Description: Protein of unknown function DUF92, transmembrane
Computational Description: Protein of unknown function DUF92, transmembrane; LOCATED IN: chloroplast, chloroplast inner membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF92, transmembrane (InterPro:IPR002794); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR