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15-4311-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 29736003 [Map]; Strand: c
      • AT1G79040.1 - [+] show detail - photosystem II subunit R
        Distance: -13; Region: promoter
    Flanking Genome Sequence: 15-4311-1 - 5-prime edge 
    CNTGANAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCAAATA CTGAGGGAGA GAAGATCCGG TAAGTGATTG 
    TGGTTATGAC ACGTGGCCAA TGTTGTGTGG CTTTGGTCTG GATATCTTCC 
    TTACTAACGT TATCTTCAAC TGGTTAAGCA GATCCGTCAG ATCAGTTTTT 
    TCTTCATTTC GTAATGCCAC GTAGGAGATG AAAAAAAACA AATGCCACGT 
    AGGATATTCA ATACTTTTTA TTTTTCATTT GTGACCCCTA CAAGTTATTT 
    TATTTTATTT TTGAGAAAAC CCCTACAAGT TATAGTTTAA TTAAAACAAC 
    CCCACTAGTT TGTCGTAAAC TCGCAATGTC TTCCACGTTG TGAATTTTGC 
    CAAGCGTTGA AATGAACCGC AAATTCGTAC ACCGATCAGC GTTTAGATAC 
    TGCGTCCATA ATTGCTCGCT CGCTGCGTCT GTAGTGTCAA CTTGACACTA 
    GTAGATGATA TTATTTTTCT TTTCTTGATT AATCAATGTC TAATGCTACT 
    CAAATTATGG CTTCTCCATA ACTGGAAACA TCAACAAACT TGACCATTGT 
    CTAATGCAAG TTCTAATCAT ATTTACTAGT AACAAATAAA TCTGTATATA 
    ATACATGATT GTATCGTACA CAAGGATTTG GGTCAATGTT TTCTATGCTT 
    ATTCTATTAT TCCTTCTACT CAAGTCATTA AGATATGATA TTAATACAAA 
    TTAAAGGTCG NTNAAATTAA TAACTATTGG GTTGATCAGT CCGATAT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 29736075 [Map]; Strand: c
      • AT1G79040.1 - [+] show detail - photosystem II subunit R
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 15-4311-1 - 3-prime edge 
    ATGAACATTA GGGTGAGAAG AGATCGAGAG AAGAATAGTT TGATCATCTT 
    GTGAGAAAAA TAATGGCTGC TTCAGTGATG CTATCTTCGG TGACATTGAA 
    ACCAGCTGGT TTCACGGTGG AGAAGACGGC GGCTAGAGGA TTACCGTCGC 
    TCACAAGAGC TCGTCCCTCC TTCAAAATTG TCGCCAGTGG CGTCAAGAAG 
    ATCAAGACCG ACAAGCCCTT CGGTTCGTTT ATATTATTAT TACACAGACT 
    TTCACAACAT ATACACGTTA CCGTTCATGT ATAGCTTATT TCCGTTAATC 
    GATGTGTGTG TAGGAATTAA CGGCAGCATG GACTTGAGGG ACGGCGTCGA 
    CGCTTCCGGC AGAAAGGGCA AGGTTTGTAG TAACTGAAAA CGGTGTCGTT 
    TAATATCCTT TGTAATAATA ATTTGGTGGG TTCTCTAAAC AATGACGTAT 
    AATCGCAGGG ATACGGTGTT TACAAGTACG TCGACAAGTA TGGAGCTAAC 
    GTCGATGGAT ACAGGTGAAT GAGAATTATC ATCCTCCATA ACATTTTTTG 
    TAGATAAGAA AGAACCATGG ATTACGTANT AGATGATTGA TTTTTAATGT 
    TTGGGTTGCA GTCCTATTTA CAACNAGAAC NANTGGTCAN CNAGTGGTGA 
    CGTGTCCAAG GGAGGAGTCN CCGGATTGGC AATTTGGGCN GGNACTCTNN 
    CCGGAATTAC CANCCNGGCC GTNNACCACC CTNNCC

AT1G79040.1

Model type
Protein coding
Short Description
photosystem II subunit R
Curator Summary
Encodes for the 10 kDa PsbR subunit of photosystem II (PSII). This subunit appears to be involved in the stable assembly of PSII, particularly that of the oxygen-evolving complex subunit PsbP. Mutants defective in this gene have reduced amounts of subunits PsbP and PsbQ in PSII. In turn, assembly of PsbR is dependent on the presence of PsbJ.
Computational Description
photosystem II subunit R (PSBR); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photosystem II oxygen evolving complex assembly, photosynthesis, response to light intensity; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, photosystem II; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II protein PsbR (InterPro:IPR006814); Has 134 Blast hits to 134 proteins in 52 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 129; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link
InterPro Scan - TAIR