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15-4403-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2944356 [Map]; Strand: w
      • AT3G09580.1 - [+] show detail - FAD/NAD(P)-binding oxidoreductase family protein
        Distance: -278; Region: promoter
      • AT3G09585.1 - [+] show detail - pre-tRNA
        Distance: -256; Region: promoter
      • AT3G09590.1 - [+] show detail - CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 ...
        Distance: -597; Region: promoter
    Flanking Genome Sequence: 15-4403-1 - 5-prime edge 
    GNGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCA GTTATAATGA TTTTAAATAA GTGTAATGGA 
    TTTTGTTGCT TAATACTTCG TCTGCTATCT TGTTTTAAAT ATTTAAGAAA 
    ATAAAACGAC TTTCGGGATT GTCTTTTTCT TTCTGTTCCA TGTCTTCTTA 
    ACTGCTATGA GTAAAAGAGC TCTCCCAGAC TCTTCTTCTA TCTCCAAAAG 
    CT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2944363 [Map]; Strand: w
      • AT3G09580.1 - [+] show detail - FAD/NAD(P)-binding oxidoreductase family protein
        Distance: -285; Region: promoter
      • AT3G09585.1 - [+] show detail - pre-tRNA
        Distance: -249; Region: promoter
      • AT3G09590.1 - [+] show detail - CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 ...
        Distance: -590; Region: promoter
    Flanking Genome Sequence: 15-4403-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TTGATTATAA GCCAAAATAG ACGGCCTATA AGCAATCACC AGTCTTCCTA 
    CTCTTCATTG GTCTTCATCT TCCGCAGGAC TAAGGTCGTC TCTTGGGCTG 
    TATCCGTCTC TACGGACTAG GACTCTGGTC TTCATAATTT GTTTTTGTTC 
    AGATTAATAA GGAAAAGAAT CAAGAAAACA AGACTTATTC GAATCTTTTA 
    AATAATTATT TGAATATATA TATATTATTT TTTCTAGACA AATAATTTTC 
    CCGGGGAAAA TAAAGTAAAG GAATGAGAAA AACCTTATCC AAACTTTTAA 
    AATGCCCGTG GCGATCTCTC TCCCAACCTC ATCTACTTCT CATTTCTTCC 
    CTCGCCGCCG CGGCCATGCA AATCACCGAT ATCAACGCTT TTCCGGAGCT 
    CAATCTTCCA CGGAAGATCC GTACATTCGG AAGAATCAAA CTGGCGTCAT 
    CATCATCGGC GCTGGACTCG CTGGTTTAGC CGCCGCAAAC CAGCTCACCT 
    CCAAACGAAT CCCTTTCCTA CTCCTCGAAG CT

AT3G09580.1

Model type
Protein coding
Short Description
FAD/NAD(P)-binding oxidoreductase family protein
Computational Description
FAD/NAD(P)-binding oxidoreductase family protein; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amine oxidase (InterPro:IPR002937); BEST Arabidopsis thaliana protein match is: Flavin containing amine oxidoreductase family (TAIR:AT5G14220.1); Has 2908 Blast hits to 2906 proteins in 704 species: Archae - 36; Bacteria - 1433; Metazoa - 261; Fungi - 51; Plants - 352; Viruses - 0; Other Eukaryotes - 775 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G09585.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Ser (anticodon: CGA)
Link
InterPro Scan - TAIR

AT3G09590.1

Model type
Protein coding
Short Description
CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein
Computational Description
CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Allergen V5/Tpx-1 related, conserved site (InterPro:IPR018244), Allergen V5/Tpx-1 related (InterPro:IPR001283), Ves allergen (InterPro:IPR002413), SCP-like extracellular (InterPro:IPR014044); BEST Arabidopsis thaliana protein match is: CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein (TAIR:AT5G02730.1); Has 3024 Blast hits to 2931 proteins in 377 species: Archae - 0; Bacteria - 64; Metazoa - 1633; Fungi - 327; Plants - 888; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink).
Link
InterPro Scan - TAIR