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15-4404-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 4454623 [Map]; Strand: w
      • AT5G13800.1 - [+] show detail - pheophytinase
        Distance: 0; Region: exon1 (5UTR)
      • AT5G13800.2 - [+] show detail - pheophytinase
        Distance: -47; Region: promoter
      • AT5G13810.1 - [+] show detail - Glutaredoxin family protein
        Distance: -710; Region: promoter
    Flanking Genome Sequence: 15-4404-1 - 5-prime edge 
    TCTCTGAGAG CGTTATTGAG AAATTAAGCG AGGAAAAATC TAAAGGTGAA 
    GAAGAAATAG AAGAATTGGG TTGCTTGCTG GCTTGGTTAA CTTCAATCGT 
    TCGGTGCAAA CCGACAGCAA CNGTTTTTAT CGAGTTTTTA TTTTTTCTTA 
    AAGGATC

AT5G13800.1

Model type
Protein coding
Short Description
pheophytinase
Curator Summary
Encodes a pheophytinase that is involved in chlorophyll breakdown.
Computational Description
pheophytinase (PPH); FUNCTIONS IN: hydrolase activity, pheophytinase activity; INVOLVED IN: chlorophyll catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT4G36530.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G13800.2

Model type
Protein coding
Short Description
pheophytinase
Curator Summary
Encodes a pheophytinase that is involved in chlorophyll breakdown.
Computational Description
pheophytinase (PPH); FUNCTIONS IN: hydrolase activity, pheophytinase activity; INVOLVED IN: chlorophyll catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT4G36530.2); Has 3014 Blast hits to 3012 proteins in 698 species: Archae - 17; Bacteria - 1970; Metazoa - 110; Fungi - 4; Plants - 264; Viruses - 0; Other Eukaryotes - 649 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G13810.1

Model type
Protein coding
Short Description
Glutaredoxin family protein
Computational Description
Glutaredoxin family protein; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Glutaredoxin family protein (TAIR:AT3G57070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR