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15-4417-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 10537881 [Map]; Strand: w
      • AT1G30040.1 - [+] show detail - gibberellin 2-oxidase
        Distance: 0; Region: exon1 (CDS)
      • AT1G30040.2 - [+] show detail - gibberellin 2-oxidase
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 15-4417-1 - 5-prime edge 
    CTCCCTAATC CCCACATACA AACCGGTTCC GGTTCTCACT TCCCATTCAA 
    TCCCCGTCGT CAACCTAGCC GATCCGGAAG CGAAAACCCG AATCGTAAAA 
    GCCTGCGAGG AGTTCGGGTT CTTCAAGGTC GTAAACCACG GAGTCCGACC 
    CGAACTCATG ACTCGGTTAG AGCAGGAGGC TATTGGCTTC TTCGGCTTGC 
    CTCAGTCTCT TAAAAACCGG GCCGGTCCAC CTGAACCGTA CGGTTATGGT 
    AATAAACGGA TTGGACCAAA CGGTGACGTT GGTTGGATTG AGTATCTCCT 
    CCTCAATGCT AATCCTCAGC TCTCCTCTCC TAAAACCTCC GCCGTTTTCC 
    GTCAAACCCC TCAAATTTTC CGGTAATCTC AAAAAACAAC GTTACATCAC 
    TTATTTTCAC TTAAGATACT GTTAAAAACA AATCTTTGTT CTAAATAAAT 
    CATCACTCCT TTTCTTTATA CATTTCAAGA AACANAGCAC TCTGTTTTGT 
    TTTTTTCATC TTCTANCTAG TACTACTTTT TTCTTNATTG AAACAATCTG 
    ACAGTTGTGA GTAAACAAAT ATAAACAGNG AGTCGGNGGA GGANTCNTGA 
    AGGANATTAA GGAAGNGNNN NNCAAGGNGT NGGANATGGN NGNNNANNAA 
    CTNNGGGATN NANCNNNGGG ACNNTNTNNT A

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 10537765 [Map]; Strand: w
      • AT1G30040.1 - [+] show detail - gibberellin 2-oxidase
        Distance: 0; Region: exon1 (5UTR)
      • AT1G30040.2 - [+] show detail - gibberellin 2-oxidase
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 15-4417-1 - 3-prime edge 
    TTAGGGAGAT GTGGTTATCT AAAGTGACTG GCTGTGGCAA AACCACCATG 
    TTTGGTTTTT GTAGGTTTAC ACTTAACTTG CAAAATCTTT ATAAAAAGAA 
    AGTTGTTGAA GATTGAAGCA AAGGTTGAGG AAGAAGAAGG AAAAGTTTTT 
    GTAGTTATGA TTTAGGAACT ATCGAGGAAA GCTATTTTGC TTGGCATTTA 
    TAGGGAGTGG TATGTGGGGG ATGACGGAGA AAAGGTTACG AAATTTATAA 
    AATGGTTACT ATGATTTTTT AATTTATTTA TTCTAAGATA TTATATGATT 
    ATTTGGTCAT ATTTATTTTT ATTTTGCATG TCGAGTCTAT TCTTGTATCT 
    CGCACACATG GAAATACAGC GTGGAGTTTT TGTTTTTATT TTCTTATTTG 
    GGTTTATGAA ATCGAAGTTG GTATANTGAG AATATGGTAT TGGTATGGNC 
    CTGTTTTATG TTTTTTCTTT TTGCNTTTTA CATTTGACTA ATCACGTNTT 
    CACCCNTNTG GATTGTNNAA CCANNCCNGG CCNNNNANNA NNCNTNCC

AT1G30040.1

Model type
Protein coding
Short Description
gibberellin 2-oxidase
Curator Summary
Encodes a gibberellin 2-oxidase that acts on C-19 gibberellins. AtGA2OX2 expression is responsive to cytokinin and KNOX activities.
Computational Description
gibberellin 2-oxidase (GA2OX2); CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283), Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: gibberellin 2-oxidase 3 (TAIR:AT2G34555.1); Has 8540 Blast hits to 8490 proteins in 994 species: Archae - 0; Bacteria - 1137; Metazoa - 84; Fungi - 1033; Plants - 4909; Viruses - 0; Other Eukaryotes - 1377 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G30040.2

Model type
Protein coding
Short Description
gibberellin 2-oxidase
Curator Summary
Encodes a gibberellin 2-oxidase that acts on C-19 gibberellins. AtGA2OX2 expression is responsive to cytokinin and KNOX activities.
Computational Description
gibberellin 2-oxidase (GA2OX2); CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: gibberellin 2-oxidase 3 (TAIR:AT2G34555.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR