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15-4418-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19640882 [Map]; Strand: w
      • AT2G48000.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: -79; Region: promoter
      • AT2G48010.1 - [+] show detail - receptor-like kinase in in flowers 3
        Distance: -495; Region: promoter
    Flanking Genome Sequence: 15-4418-1 - 5-prime edge 
    AGGAGGAGCA ATTGAGATGC TCTCTCTCAA AGTCAAGGGT GATGATTCGG 
    CCCTTTCGGT TCTATTTGGG CCTTTTCGTC ATTTCTCGGC CCATTTGAAA 
    TGTCCATTTA TTTTTGTTGG TTTGAAGTCA AACGGTGGAA TATAGAATTT 
    CTTAGAATAC ACACAACACA GATTCTTTTC TTCGCATGTT CCGGCGGCCA 
    TCACGTGTAG ATTAGTAATT GTGAGCAGCA GAGCTATGAT AAGACTAAGA 
    CACGTTTGGA TTTATTAGAT AATGCAATTA GGCTTGTTAT TAAATACGAA 
    ACAGAAACAT GAGTAGGTAA GACCTCTTCA GGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19640766 [Map]; Strand: w
      • AT2G48000.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon1 (CDS)
      • AT2G48010.1 - [+] show detail - receptor-like kinase in in flowers 3
        Distance: -611; Region: promoter
    Flanking Genome Sequence: 15-4418-1 - 3-prime edge 
    CTCCTCCTAG TCTCCATGAA GAAGCGCATG TGGAGAATCT CACTGATTTC 
    CCAGATATCT GATCTGCTCT GCCTTTCCCG TGGCTCTTCT GCAACCTTGA 
    AGACTCTGAC CCCATTCTGC TTTACCCTCT CCAGGTCTCC CTTCCACCAA 
    TCCGGGGGCG ATGATGATGC TTCGGGATTG AAAAACCAAT TGTTGCGCTT 
    CCGTAATGAT TCCGGTAAAG TTGCCTCCGT TTTGGAGAGG AACAAAATCC 
    AAGGAGCTGC GTTTGTTGAG CTCCTTAGGC AGTTACGTCC ATGGCCCGTT 
    TTGTCCCAAC TGGTATACAT ACATCTTTTT TGTCTTCGAA TTTCACAACC 
    ACAAAAGAAA AAGCCTTTTT TCCGTCATGT TTGATGTTGT TGCTTTGCAG 
    GTGTTCGACT GGAGAAGAAA CAAGGCACTA TGCGATGGGT TGCCTATGAC 
    TGCTGATGAA TACGCTAAGG GCATTACCAT TTCTGGTAGA CTGAAGAATG 
    TCGATTTGGC CCTTTCCTTG TTTCACGAGT CTGCAAACAA GACCACCTCC 
    GTCTACAATG CTTTGATGGG TGCTTACCTC TGCAACGGTT TGTCTCATCA 
    TTGCGAGCAG CTCTTCCTTG ACTTCAATTC TCAACAAGAC GGACCCTCCT 
    CTTCTACTCC ATCTGTCTCT ACTTACAACA TCCTCATTTC TNTTTATGGC 
    CGTTTGATTA TGGGTGAGCG GATGGAATCA GTATTCCTAC AGCTTNAACA

AT2G48000.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G30780.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G48010.1

Model type
Protein coding
Short Description
receptor-like kinase in in flowers 3
Curator Summary
receptor-like serine/threonine kinase (RKF3)
Computational Description
receptor-like kinase in in flowers 3 (RKF3); FUNCTIONS IN: receptor signaling protein serine/threonine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G11050.1); Has 112833 Blast hits to 111726 proteins in 4356 species: Archae - 97; Bacteria - 12546; Metazoa - 41926; Fungi - 9138; Plants - 32648; Viruses - 383; Other Eukaryotes - 16095 (source: NCBI BLink).
Link
InterPro Scan - TAIR