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15-4419-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8453033 [Map]; Strand: c
      • AT1G23910.1 - [+] show detail - Polyketide cyclase/dehydrase and lipid transport superfamily protein
        Distance: -1744; Region: intergenic
      • AT1G23920.1 - [+] show detail - transposable element gene
        Distance: -1167; Region: intergenic
    Flanking Genome Sequence: 15-4419-1 - 5-prime edge 
    GTGATAAACN AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT CTTTTACTAA CATAGTTATA TTATAATATT 
    CATTTGTTAA CACTTATCAT TCATCATGTT CAGTGGCGGA CCGAGGATTT 
    ATTTTTAGGG GGGTCATAGA TATATGTTAA AAGAATAAAA ATTACTCAAA 
    AGTGTAATAA GGCAGGGTCG AACTCTTGTT TAGGGGTGTC AACAGAAAGA 
    GAACTACCAA CTATGCTGCT ATCTCTTTAA GGATTTCTAT GCATTAAACT 
    TAATTTGTAG ATTTAACCTG GGTCAACTGA CACCCCTCCT TCCTTAGTGG 
    ATC

AT1G23910.1

Model type
Protein coding
Short Description
Polyketide cyclase/dehydrase and lipid transport superfamily protein
Computational Description
Polyketide cyclase/dehydrase and lipid transport superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to biotic stimulus, defense response; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Bet v I allergen (InterPro:IPR000916); BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT1G24000.1); Has 66 Blast hits to 64 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G23920.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
Mutator-like transposase family, has a 3.6e-77 P-value blast match to Q9SI25 /181-349 Pfam PF03108 MuDR family transposase (MuDr-element domain)
Link
InterPro Scan - TAIR