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15-4481-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7886324 [Map]; Strand: w
      • AT1G22330.1 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
        Distance: -218; Region: promoter
    Flanking Genome Sequence: 15-4481-1 - 5-prime edge 
    GTGANAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT TGTCACTCTT CTTACAAAAC CCCAAAGAAA 
    ATCTAATTCC TTCTTACATT AACTTACCAA GTCTCTCTCT ATCCATCTCT 
    AAGAGTAGGG TCAGAGGCAA AATACTGGCA TCGTTTAAGA GTTCCAATTT 
    GCAACCAAAA AATATAAAGA GAGGAAAATG AAAAAGTCGT TTCTTTGGCA 
    TTTGACGATA TAAAGAAGCT AACTTTCCCT CATTTACAAT CTTTTCTTCT 
    TTTCTTTCTT GGCTCATGTT TTAATTAGAC AGACCCCATT TTCATATATT 
    CATTCATTAA ATTTTATTCA AACCATTTTT TTTATCGGTG TATATCATCA 
    CA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7886315 [Map]; Strand: w
      • AT1G22330.1 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
        Distance: -227; Region: promoter
    Flanking Genome Sequence: 15-4481-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCA 
    AGCACTGAGT ATGTCTTCGC TGGCTATAAC TTGCCAGGTT TTAACATTAT 
    AGCTCTTCCA CAACTTTTCT TTTTTTCCTC CATTAAAATA CCTTCTTTAA 
    TGTTTTCTAA TAATATAGTG ATTATGGCAG ATTATCCGTA AAGTCAAGGT 
    ATTATTCCGA GTTGAAACAG AGTTTTACTA ATCACGCAAT TAAGTTGTTT 
    GGAATCAGGA TTTTTTTACT TCACAATTTT AAAGTCAACG ATAAATATAT 
    ATTTAAAAAG AGTTAGATCA GAAACCCTAT TTGACATATA GCGTTGCCAT 
    GCAATCTCGA CATAACTATT TTTTATTTAT TAACTAAATT TTCTTAATAA 
    TTCGTAGCCA AATGTAAAGT AAGTATGTAA TGTGAATCAA AGATAAGAAT 
    TAGATAATAC TAGTAATGAT GTTTATGCTA ATCAGATTTC AAATTCCTTT 
    TGTGATTTTA GTGGAATT

AT1G22330.1

Model type
Protein coding
Short Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G78260.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR