Home
Mutant Lines
15-4493-1

15-4493-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

3 prime edge [+] show sequence

Chromosome: 3; Position: 23222112 [Map]; Strand: w
- AT3G62770.1 - [+] show detail - Transducin/WD40 repeat-like superfamily protein
  Distance: -880; Region: promoter
- AT3G62770.3 - [+] show detail - Transducin/WD40 repeat-like superfamily protein
  Distance: -880; Region: promoter
- AT3G62780.1 - [+] show detail - Calcium-dependent lipid-binding (CaLB domain) family protein
  Distance: 0; Region: exon1 (CDS)

ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCAT 
CATGTCCACC AGAAGGTTAT TCAACGGTGG CTCCGCCGCT GACACAACCG 
GGACTATATC CACCGATGAG TCCTTACAGA TATTAATTGA TTGTCAACGT 
CTGGAAGCCT AGTCGTCGGT TTGGAGATTT GTTGATTTTA TTTAACTAAT 
GATGTCATCA ATTCCCCCAA CTTGTGTGTG TGTTCTTTTT CTTCGAACTC 
AACATAAAAA TTGTTGTGTG TTTTTTTCTC TCTTTCTAAC AAAATCACAC 
CCTAAATTGT TACGTTCTTT ACTTAGACGT TTTTGGTTTG TAAAATGCTC 
TATCTGTATC ATGTTTGTAC TGTCTTGTAC TCTCCAAAAA TGGTTCACCA 
TTGATGAATG ATGCACCTGG TTAATATATA TAACAAACCT TTTTGGAAAA 
AGAATAAAAA TTGTTGCGTT TTTTTTATTT TTGAAAAATC TTCTTCATAA 
TATTATTTCT ACATTTTTTT AGTTGGCATA NATAAATGCG AGATTTATGT 
AACAATCAAT TAATTATCCT TCAAAATAAA CAATAGGAAG AAAAAAAAAA 
NCNTNNTTTT TNTNNAAATA CCNNATTTTT TATTGGGTTT NCCTTTNAAA 
AAANTCNAAA TNTNTTTNNA ANCCAAAGGG NAAANNNNTT TTTNNNNTTN 
NCCNTNTNNN GGGANNTTTG ATTNNTNNTT NGGAGTTTTT TTAAATNNNA 
AANCAAAAAA NNAANTTTTT TAAAAAATTG GCNTAANAAA AAA

5 prime edge [+] show sequence

Chromosome: 3; Position: 331870 [Map]; Strand: c
- AT3G01990.1 - [+] show detail - ACT domain repeat 6
  Distance: 0; Region: exon6 (CDS)

GNGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
CCCATCCTAC TTTCATAGAA CGTGTCTTTA GCCTTACCCT CTCGCGTTGA 
TATCTCTGCT CTCACAATGG TTAAGCTGTT CTCTCGGAAT GTTCTGGTTA 
TGTCTGAGAG AAGACCAACT CGGTCTTCTG CTGATAATTC CAGCTCTAAA 
CCCTGAAAGT ATGTTTCATA TGCACAATCT GTCTTGAGTA TATCAGAAAT 
CGATGCAGAA CAGAATGTAA TTTGAGCCAA GACAGAGAAT TTTCACATTC 
CTAATTGGTT ACCTCCGATG CTCTCCTCTC AATGGCTGCT TCCAGACATT 
GTATGACACG TTCTTGCTCT GCTTCTGAGT TTATGGGAAG TCCATCCACA 
TGACGGATGT AAAATTCCTG CAGCAAAACA CTCATATTAT TGTTAGAAGA 
GAGATCCCAA CAGACGGCCG TTGAGTAGTT ACCTGATAAG CCTCCACTGG 
TTCTGTGCTG ACCATGCCAT GGAACACCAC ATACTGCATA TCAGTCAAAG 
TACAGACTAC GTCAAACACA AGCT

AT3G01990.1

Model type: Protein coding
Short Description: ACT domain repeat 6
Curator Summary: Member of a small family of ACT domain containing proteins in Arabidopsis. ACT domains are involved in amino acid binding.
Computational Description: ACT domain repeat 6 (ACR6); FUNCTIONS IN: amino acid binding; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, carpel, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Amino acid-binding ACT (InterPro:IPR002912); BEST Arabidopsis thaliana protein match is: ACT domain repeat 4 (TAIR:AT1G69040.1); Has 3173 Blast hits to 1993 proteins in 619 species: Archae - 0; Bacteria - 2121; Metazoa - 0; Fungi - 0; Plants - 561; Viruses - 0; Other Eukaryotes - 491 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G62770.1

Model type: Protein coding
Short Description: Transducin/WD40 repeat-like superfamily protein
Curator Summary: Required for autophagosome formation during nutrient deprivation and senescence.
Computational Description: AtATG18a; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: autophagy, leaf senescence, response to starvation; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: homolog of yeast autophagy 18 (ATG18) D (TAIR:AT3G56440.1); Has 1516 Blast hits to 1443 proteins in 266 species: Archae - 0; Bacteria - 93; Metazoa - 578; Fungi - 450; Plants - 210; Viruses - 2; Other Eukaryotes - 183 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G62770.3

Model type: Protein coding
Short Description: Transducin/WD40 repeat-like superfamily protein
Curator Summary: Required for autophagosome formation during nutrient deprivation and senescence.
Computational Description: AtATG18a; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: autophagy, leaf senescence, response to starvation; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: homolog of yeast autophagy 18 (ATG18) D (TAIR:AT3G56440.1); Has 213 Blast hits to 211 proteins in 57 species: Archae - 0; Bacteria - 30; Metazoa - 48; Fungi - 45; Plants - 63; Viruses - 2; Other Eukaryotes - 25 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G62780.1

Model type: Protein coding
Short Description: Calcium-dependent lipid-binding (CaLB domain) family protein
Computational Description: Calcium-dependent lipid-binding (CaLB domain) family protein; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT3G16510.1); Has 675 Blast hits to 575 proteins in 98 species: Archae - 0; Bacteria - 10; Metazoa - 206; Fungi - 19; Plants - 326; Viruses - 29; Other Eukaryotes - 85 (source: NCBI BLink).
Link: InterPro Scan - TAIR