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15-4498-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19568137 [Map]; Strand: w
      • AT2G47760.2 - [+] show detail - asparagine-linked glycosylation 3
        Distance: 0; Region: exon1 (CDS)
      • AT2G47760.3 - [+] show detail - asparagine-linked glycosylation 3
        Distance: 0; Region: exon1 (CDS)
      • AT2G47760.1 - [+] show detail - asparagine-linked glycosylation 3
        Distance: 0; Region: exon1 (CDS)
      • AT2G47770.1 - [+] show detail - TSPO(outer membrane tryptophan-rich sensory protein)-related
        Distance: -327; Region: promoter
    Flanking Genome Sequence: 15-4498-1 - 5-prime edge 
    GGCGATAATA AGTGCGACTA GGATTGCATC AGCAAGAATT AGCGCGAATG 
    CGAATGGAAC TGCAGGTTTT TTGAATAGAT CGGATCGATT CGTCTCCTTC 
    CCCAGCCGAC GGCTACGAGA AGCTCTCAAA CTCGCCGGTG ATGAGGCGCC 
    CGCCATGAAA ACAGAGCAAA TCGCATCAGC GTCTAGCCAA CGCCGCGTAA 
    CAGACAACTA CTTCCATATT ACTACTCTTC TAATTAGCCC AAATTAAATG 
    AGCCTATTGG GCTTCTTGTC TTAGTCGGTG TAGAGCCCAA TTGTTGTTTT 
    ATTTTTTTAA TAATGCAAAA GTATTAAGCG ATAAATAAAT AAGCATCGCA 
    ATCGTCCCAA AACTGTGTGT ATGCATCAGA CATGAGCATA TAGAGTAAGC 
    ACGTGTCCAC ACTTTTTCAC AAAGTTATCT AAAAACAAAA AACAATTAAT 
    TAGCATTCGA CGTGTACATA TCACTCGCCA CGTGTACAAG AGCCTTGGCC 
    TTTTTGCTTC TTCTTCTTGT CTATTAATAT CATCTCCTGA TTATACTCTC 
    TTTTGACCAA GCTGCTTCTT CTNCATCGAT CCAACATCTC AAATCTCAGT 
    AATCTTGTTC CTTCGATTCT GGTTTGGACG TTTGAATGGA TTCTTANGAC 
    ATNAGATACC CGGGGCGGAN ACNACAGANA CCCTGCAACG ACNGCTATGG 
    CCGANACAAA AAGGAAAAGC GCTG

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19568021 [Map]; Strand: w
      • AT2G47760.2 - [+] show detail - asparagine-linked glycosylation 3
        Distance: 0; Region: intron1 (CDS)
      • AT2G47760.3 - [+] show detail - asparagine-linked glycosylation 3
        Distance: 0; Region: intron1 (CDS)
      • AT2G47760.1 - [+] show detail - asparagine-linked glycosylation 3
        Distance: 0; Region: intron1 (CDS)
      • AT2G47770.1 - [+] show detail - TSPO(outer membrane tryptophan-rich sensory protein)-related
        Distance: -443; Region: promoter
    Flanking Genome Sequence: 15-4498-1 - 3-prime edge 
    TTATCGCCTA TGTTCCATGT GAGAGCTATT TACCTCCTTT TTTTTTTNGC 
    TNGCGTNNCC CNCAAAANGG NCNTTNGCNT AGGTTTAAAN CCAAATTTCG 
    NCNTTNNCCT TTANCAAACC CAAAAATCNA TGGGNANGCT NNCNTGTCNC 
    AGGNAAGNGN NAANGGNNAN CNGGGGTTTN TTNAAAGAAA NCTANNANTC 
    TTNAAGGNAA ATTNATNNAA TNGGGGCNGG TTAGGGGGTT TNTNGGGGGA 
    AAAAAAAACT NNGGNAACTT NAANGGCAAN CCNGGNCCNT NGGTTNNNCC 
    ACCNGGTTCC CNNTNTGTTA NCNNNGCNGG GCAAAACTNA NCNGGNGGGG 
    AAGTCTNCCC NGCTNAGGGN CTNGNAATNC CCTNTTTTNN AATCNCCNAT 
    NTTGGNATAA CCNGNGNAAT TNNACCCNNC CANCNCTTNN TTNGNCNAAA 
    TTNTNCNCTN TNACATTTNG NAAATTNTTT TGGGGGTNCN NTACATNGCC 
    AANCGGGGGA TCGTNTNGAN CNTNTNCGGA AAAACNGANG GGGTNTAAAN 
    NAAAACTTAT TNNTNANCNC TTTNNANANA NGTTTTTGNA AACGTTNNAA 
    AANCGTGGNC CNTTNNCAAN GTNAANNAAA AAATTNNGGN TTNAATNNNC 
    CNGGNNNNNA GGGGGGGNNT TTNGGAATTA NNNNNNGGGC NNNNAACNNC 
    CNGGNCC

AT2G47760.1

Model type
Protein coding
Short Description
asparagine-linked glycosylation 3
Computational Description
asparagine-linked glycosylation 3 (ALG3); CONTAINS InterPro DOMAIN/s: Glycosyltransferase, ALG3 (InterPro:IPR007873); Has 381 Blast hits to 338 proteins in 173 species: Archae - 2; Bacteria - 2; Metazoa - 149; Fungi - 152; Plants - 35; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47760.2

Model type
Protein coding
Short Description
asparagine-linked glycosylation 3
Computational Description
asparagine-linked glycosylation 3 (ALG3); CONTAINS InterPro DOMAIN/s: Glycosyltransferase, ALG3 (InterPro:IPR007873); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47760.3

Model type
Protein coding
Short Description
asparagine-linked glycosylation 3
Computational Description
asparagine-linked glycosylation 3 (ALG3); CONTAINS InterPro DOMAIN/s: Glycosyltransferase, ALG3 (InterPro:IPR007873); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47770.1

Model type
Protein coding
Short Description
TSPO(outer membrane tryptophan-rich sensory protein)-related
Curator Summary
Encodes a membrane-bound protein designated AtTSPO (Arabidopsis thaliana TSPO-related). AtTSPO is related to the bacterial outer membrane tryptophan-rich sensory protein (TspO) and the mammalian mitochondrial 18 kDa Translocator Protein (18 kDa TSPO), members of the TspO/MBR domain-containing membrane proteins. Mainly detected in dry seeds, but can be induced in vegetative tissues by osmotic or salt stress or abscisic acid treatment. Located in endoplasmic reticulum and the Golgi stacks.
Computational Description
TSPO(outer membrane tryptophan-rich sensory protein)-related (TSPO); CONTAINS InterPro DOMAIN/s: TspO/MBR-related protein (InterPro:IPR004307); Has 567 Blast hits to 567 proteins in 188 species: Archae - 24; Bacteria - 226; Metazoa - 151; Fungi - 6; Plants - 53; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).
Link
InterPro Scan - TAIR