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15-4510-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8800853 [Map]; Strand: c
      • AT1G25054.1 - [+] show detail - UDP-3-O-acyl N-acetylglycosamine deacetylase family protein
        Distance: 0; Region: intron3 (CDS)
      • AT1G25054.2 - [+] show detail - UDP-3-O-acyl N-acetylglycosamine deacetylase family protein
        Distance: 0; Region: intron2 (5UTR)
      • AT1G24996.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -443; Region: promoter
      • AT1G25025.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: exon1 (CDS)
    2. Chromosome: 1; Position: 8815231 [Map]; Strand: c
      • AT1G25097.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -443; Region: promoter
      • AT1G25112.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: exon1 (CDS)
    3. Chromosome: 1; Position: 8829609 [Map]; Strand: c
      • AT1G25180.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 15-4510-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TGCCTACACG CAGAAGGCTA TAAATACGGA ATAGCATGTC TTGTCAAAGG 
    GGGATTCCGC CGGACACGCA GAGACACAGA GCAGCTCGTC AGCTCACCCG 
    TCCGAAGTAT CCCGCCAGCC GGTCCGTCTC AAGCAGCTCG TCAGCTCACC 
    CGTCTCAAGC AGCTCGTCAG CTCTCCCCTC CGAAGTATCC CGCCAGCCGG 
    TCCGTCTCAA ACAGCTCGTC AGCTCACCCG TCTCAAGCAG CTCGTCAGCT 
    CACCCGTCCG AAGTATCNCG CCAGCCGGTC CGTCTCAAGC AGCTCGTCAG 
    CTCACCCGTC TCAAGCAGAT CGTCAGCTCA CCCGTCTCAA GCAGCTCGTC 
    AGCTCTCCCN TCCGAAGTAT CNCGCCAGCC GGTCCGTCTC AAGCAGCTCG 
    TCAGCTCACC CGTCTCAANC AGCTCGTCAG CTCTCCCNTC CGAAGTATCN 
    CGCCAGCCGG TCCGTCTCAA ACAGCTCGTC AGCTCACCCG TCTCAAGCAG 
    CTCGTCAGCT CACCCGTCCG AAGTATCNCG CCAGCCGGTT CGTCTCAAGC 
    AGCTCGTCAG CTCACCCGTC TCAAGCAGCT CGTCAGCTCA CCCGTCTNAA 
    GCAGCTCGTC AGCTNACCCG TNTCAAGCAG CTCGTCAGCT ACCCGTCAAA 
    GTACCTNGTN TGCCCATCCA TNTTGAGTAA CTNGTTNACT CNTTCNGTCC

AT1G24996.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24822.1); Has 11 Blast hits to 11 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G25025.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G25112.1); Has 8171 Blast hits to 2608 proteins in 364 species: Archae - 0; Bacteria - 499; Metazoa - 1710; Fungi - 974; Plants - 287; Viruses - 83; Other Eukaryotes - 4618 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G25054.1

Model type
Protein coding
Short Description
UDP-3-O-acyl N-acetylglycosamine deacetylase family protein
Computational Description
UDP-3-O-acyl N-acetylglycosamine deacetylase family protein; FUNCTIONS IN: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity; INVOLVED IN: lipid A biosynthetic process; CONTAINS InterPro DOMAIN/s: UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal (InterPro:IPR015870), UDP-3-O-acyl N-acetylglucosamine deacetylase (InterPro:IPR004463), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal (InterPro:IPR011334); BEST Arabidopsis thaliana protein match is: UDP-3-O-acyl N-acetylglycosamine deacetylase family protein (TAIR:AT1G24880.1); Has 5320 Blast hits to 5320 proteins in 1417 species: Archae - 0; Bacteria - 2992; Metazoa - 1; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 2270 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G25054.2

Model type
Protein coding
Short Description
UDP-3-O-acyl N-acetylglycosamine deacetylase family protein
Computational Description
UDP-3-O-acyl N-acetylglycosamine deacetylase family protein; FUNCTIONS IN: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity; INVOLVED IN: lipid A biosynthetic process; CONTAINS InterPro DOMAIN/s: UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal (InterPro:IPR015870), UDP-3-O-acyl N-acetylglucosamine deacetylase (InterPro:IPR004463), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal (InterPro:IPR011334); BEST Arabidopsis thaliana protein match is: UDP-3-O-acyl N-acetylglycosamine deacetylase family protein (TAIR:AT1G24880.1); Has 5321 Blast hits to 5321 proteins in 1417 species: Archae - 0; Bacteria - 2995; Metazoa - 1; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 2270 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G25097.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24822.1); Has 12 Blast hits to 12 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G25112.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G25025.1); Has 8171 Blast hits to 2608 proteins in 364 species: Archae - 0; Bacteria - 499; Metazoa - 1710; Fungi - 974; Plants - 287; Viruses - 83; Other Eukaryotes - 4618 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G25180.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G25025.1); Has 8171 Blast hits to 2608 proteins in 364 species: Archae - 0; Bacteria - 499; Metazoa - 1710; Fungi - 974; Plants - 287; Viruses - 83; Other Eukaryotes - 4618 (source: NCBI BLink).
Link
InterPro Scan - TAIR